PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00408g11004.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family GRAS
Protein Properties Length: 551aa    MW: 62801.4 Da    PI: 5.4602
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00408g11004.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS294.62.6e-901555311374
                      GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn.sseelaalkl 83 
                               lve Ll+ Ae v ++++ +a++lL +  +l+s++g+p++Rl+ yft+AL++r+ r +++++ k l  +  ++ +   ++++  ++
  Peinf101Scf00408g11004.1 155 LVECLLASAEKVGEKQFDRATKLLDECDKLSSKTGNPVERLIYYFTRALRERVDReTGKNCTKGLWINGLQDLQeALRSINPCTI 239
                               5789***************************************************889999999966665543326677777778 PP

                      GRAS  84 fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egpp..slRiTgvgspesgskeeleetger 164
                                ++  P+ +++ ++  qaI+e v +++++HiiD++i++G+QW  L+qaLa+ +  +++p  +l+iT+++  +++s+  +e tg+r
  Peinf101Scf00408g11004.1 240 AVHDMPLCQVTKFAGIQAIVENVRNSKKIHIIDLEIKMGGQWTILMQALATHQqeSQSPieHLKITALVLGTPQSRPLIEDTGKR 324
                               9999**********************************************88866444456*********9999*********** PP

                      GRAS 165 LakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhn 249
                               L++fAe++  +f f++++++++ dl+ e+L+++++E +aV + + l ++  ++ +     d ++ ++k ++P+++v+ e ea+hn
  Peinf101Scf00408g11004.1 325 LRSFAESFTFSFIFKIVMVENILDLKREDLDLDSEELIAVYSLYFLTNIIMQQDK----LDFLMGFIKAMNPRIMVIGEIEANHN 405
                               *************************************************944444....566*********************** PP

                      GRAS 250 sesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaa 334
                               s+ F++rf+eal y+ a+fd +e  + +++++r+ +E e++ + i+n+va+eg+er  rh t   Wre ++++ +++++ls++  
  Peinf101Scf00408g11004.1 406 SPVFVNRFIEALFYHGAFFDLFEDCMKNDESNRMAIESEVMWQGIRNIVAAEGDERAIRHVTIDLWREYFKRFSMEEMKLSNSSL 490
                               ************************************************************************************* PP

                      GRAS 335 kqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                qak++l+k++ ++ +++e + ++lvlgWk+ pL s+SaW+
  Peinf101Scf00408g11004.1 491 YQAKMVLEKFSvGKSFTLEMNGNCLVLGWKGTPLNSLSAWK 531
                               ***********9999*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.566129510IPR005202Transcription factor GRAS
PfamPF035148.9E-88155531IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 551 aa     Download sequence    Send to blast
MEPALEISWL STALELHQED KEDIIDKKEV PSAADFVDFD DWDFDVVDET KQVLCIPYEK  60
KKDSPMINSL NILKDFGNGF RKLKGQKITI KTSESECTPK SVCKLPTDAI LRLAGQKFIR  120
SSEQSVQESS LSTLDHPFVS CLMSLSEEDT KSVALVECLL ASAEKVGEKQ FDRATKLLDE  180
CDKLSSKTGN PVERLIYYFT RALRERVDRE TGKNCTKGLW INGLQDLQEA LRSINPCTIA  240
VHDMPLCQVT KFAGIQAIVE NVRNSKKIHI IDLEIKMGGQ WTILMQALAT HQQESQSPIE  300
HLKITALVLG TPQSRPLIED TGKRLRSFAE SFTFSFIFKI VMVENILDLK REDLDLDSEE  360
LIAVYSLYFL TNIIMQQDKL DFLMGFIKAM NPRIMVIGEI EANHNSPVFV NRFIEALFYH  420
GAFFDLFEDC MKNDESNRMA IESEVMWQGI RNIVAAEGDE RAIRHVTIDL WREYFKRFSM  480
EEMKLSNSSL YQAKMVLEKF SVGKSFTLEM NGNCLVLGWK GTPLNSLSAW KFRKSSTSHG  540
VLLTLMNKKS V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-381545317375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019237374.10.0PREDICTED: DELLA protein RGL1-like
TrEMBLA0A1S4BHG30.0A0A1S4BHG3_TOBAC; DELLA protein RGL1-like
STRINGXP_009602534.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34272149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.12e-54RGA-like 2