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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00400g04014.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | CAMTA | ||||||||
Protein Properties | Length: 982aa MW: 109446 Da PI: 6.0737 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 150.7 | 3.5e-47 | 7 | 135 | 2 | 116 |
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpk.............sgsliLynrkkvryfrkDGyswkkkkdgktvrEdhek 72 ++e + rwl++ e++ iL+n+e +++++++++p sgs++L+nr+++ryfrkDG+sw+kkkdgk+v E+he+ Peinf101Scf00400g04014.1 7 VQEgRFRWLRPAEVLFILQNYEDQQIAHHPPQKPAsslltsisscfhfSGSMFLFNRRVLRYFRKDGHSWRKKKDGKAVGEAHER 91 667799***************************97334444444444459*********************************** PP CG-1 73 LKvggvevlycyYahseenptfqrrcywlLeeelekivlvhyle 116 LKvg+ e+l+cyYah+e+np+f+rr+yw+L+ ++e+ivlvhy++ Peinf101Scf00400g04014.1 92 LKVGNAEALNCYYAHGENNPNFRRRIYWILDPAYEHIVLVHYRD 135 ******************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 71.465 | 3 | 142 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 1.0E-65 | 6 | 137 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 4.0E-41 | 11 | 135 | IPR005559 | CG-1 DNA-binding domain |
Gene3D | G3DSA:2.60.40.10 | 6.9E-10 | 411 | 497 | IPR013783 | Immunoglobulin-like fold |
Pfam | PF01833 | 3.5E-8 | 413 | 496 | IPR002909 | IPT domain |
SuperFamily | SSF81296 | 2.24E-19 | 413 | 497 | IPR014756 | Immunoglobulin E-set |
CDD | cd00102 | 4.93E-6 | 413 | 497 | No hit | No description |
Gene3D | G3DSA:1.25.40.20 | 1.3E-14 | 611 | 707 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 13.681 | 612 | 704 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 6.53E-15 | 616 | 706 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 3.50E-13 | 632 | 704 | No hit | No description |
Pfam | PF12796 | 1.0E-6 | 633 | 705 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50088 | 10.179 | 645 | 677 | IPR002110 | Ankyrin repeat |
SMART | SM00015 | 64 | 762 | 784 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 7.876 | 763 | 792 | IPR000048 | IQ motif, EF-hand binding site |
SuperFamily | SSF52540 | 2.47E-6 | 813 | 870 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
SMART | SM00015 | 0.038 | 821 | 843 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 7.565 | 822 | 851 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.0034 | 824 | 842 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 0.0013 | 844 | 866 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 9.029 | 846 | 871 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 2.3E-5 | 847 | 866 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 982 aa Download sequence Send to blast |
YNINDLVQEG RFRWLRPAEV LFILQNYEDQ QIAHHPPQKP ASSLLTSISS CFHFSGSMFL 60 FNRRVLRYFR KDGHSWRKKK DGKAVGEAHE RLKVGNAEAL NCYYAHGENN PNFRRRIYWI 120 LDPAYEHIVL VHYRDITEGR QVAAFMSQSS SITPTFSLSS SFYSTQHPGF TVVGSESYQQ 180 YQNDSSPGSV EICSDAVINS NGMNVTDITG RLEGVSSSPR VEMSDALRSL KEQLSLNDDN 240 LETEVYSEIE NLDDAENLVY DDGSLVQIHD SSDNLMLQPH SGESSESQHQ LLDLDANMWK 300 EMLDRCRRFP AAESQARCIE KLDENGMLQN SSGRGPIEET EIDGWLKFGG EEALKSSFTN 360 LYQVDDFKYP ACARINTYGS TPDQYTTTFD QARIGTPFED DMSLTIAQKQ KFTIHDVSPD 420 WGYSSEATKV VIVGSFLCNP SEYTWTCMFG DIEVPVQIIK EGAIRCHAPP HLPGKVTLCV 480 TSGNRVSCSE LREFEYRVKL DDHGQNNLPE VGGACNSSEE LLLLVRLVQM LLSDKSVQKG 540 DGSESSNDIL EKSKASFDTW SQVIESLLLG TSTSTMTVDW LLQELLKDKL QQWLSSKLQA 600 KNNEMGGSLS KKEQGIIHTV AGLGLEWALH PILDAGVSVN FRDINGWTAL HWAARFGREK 660 MVASLIASGA FAGAVTDPSA QDPLGKTAAS IASSCGHKGV AGYLSEVSLT SHLSSLTIEE 720 SELSKGTADV EAENTISTIS TASAATYEDQ LSLKDTLAAV RNAAQAAARI QSAFRAHSFR 780 KRRQREAARA ATTGGDEYSV LSNNALGLSA ASKLAFRNTR DKNSAALVIQ KKYRGWKGRK 840 DFLAFRQKVV KIQAHVRGYQ VRKEYKVCWA AGILEKVVLR WRRRGVGLRG FRLEEEPIEE 900 CEDEDILKVF RKQKVDAAIN EAVSRVLSMV DSPEARQQYH RILEKYRQAK AELGVAKSET 960 GSTAHSDISN IENDDIYHSQ IL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009592004.1 | 0.0 | PREDICTED: calmodulin-binding transcription activator 4-like isoform X1 | ||||
Refseq | XP_016507791.1 | 0.0 | PREDICTED: calmodulin-binding transcription activator 4-like isoform X1 | ||||
Swissprot | Q9FYG2 | 0.0 | CMTA4_ARATH; Calmodulin-binding transcription activator 4 | ||||
TrEMBL | A0A1S4D334 | 0.0 | A0A1S4D334_TOBAC; calmodulin-binding transcription activator 4-like isoform X1 | ||||
STRING | XP_009592002.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3932 | 20 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67310.1 | 0.0 | Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains |
Publications ? help Back to Top | |||
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