PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00395g02051.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | bHLH | ||||||||
Protein Properties | Length: 310aa MW: 34926.2 Da PI: 6.7321 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37.4 | 4.6e-12 | 164 | 211 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + h ++Er+RR+++ ++f L l+P + kK++Ka++L A++++k+Lq Peinf101Scf00395g02051.1 164 QDHIIAERKRREKLSQRFIALSALIPGL-----KKMDKASVLGDAIKHLKQLQ 211 6799************************.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.447 | 161 | 210 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 9.3E-10 | 164 | 211 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.3E-16 | 165 | 222 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.45E-12 | 166 | 215 | No hit | No description |
SuperFamily | SSF47459 | 1.83E-16 | 166 | 227 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.2E-14 | 167 | 216 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 310 aa Download sequence Send to blast |
MEYHGFNQQW PISSFDELSA ISIAASFGEN NYLHESSPFI SQPIVGLKRP AADQLSQIVE 60 QRPLKNHKTS PSWNNYENNH ILSSSQSAAS PNYHLINSNN YTNQVMNLKP KEESTTMSSS 120 SITFAADQMV SQDSFANQNY MFKANLQGAN KSVISTNGKL TQAQDHIIAE RKRREKLSQR 180 FIALSALIPG LKKMDKASVL GDAIKHLKQL QEKVKTLEEQ TRKKPVESVV FVKKYELYGD 240 AENSSSDENF SSGTLQVDEP LPEIEARISE RNVLVRIHCE KRKGIVDKTV AEIEKLNLSM 300 DEEFAMTVQD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 3e-13 | 165 | 242 | 8 | 83 | Transcription factor MYC2 |
5gnj_B | 3e-13 | 165 | 242 | 8 | 83 | Transcription factor MYC2 |
5gnj_E | 3e-13 | 165 | 242 | 8 | 83 | Transcription factor MYC2 |
5gnj_F | 3e-13 | 165 | 242 | 8 | 83 | Transcription factor MYC2 |
5gnj_G | 3e-13 | 165 | 242 | 8 | 83 | Transcription factor MYC2 |
5gnj_I | 3e-13 | 165 | 242 | 8 | 83 | Transcription factor MYC2 |
5gnj_M | 3e-13 | 165 | 242 | 8 | 83 | Transcription factor MYC2 |
5gnj_N | 3e-13 | 165 | 242 | 8 | 83 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 169 | 174 | ERKRRE |
2 | 170 | 175 | RKRREK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019232955.1 | 1e-169 | PREDICTED: transcription factor bHLH25-like | ||||
TrEMBL | A0A1J6KYH2 | 1e-168 | A0A1J6KYH2_NICAT; Transcription factor bhlh25 | ||||
STRING | XP_009779237.1 | 1e-168 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1760 | 24 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 1e-48 | bHLH family protein |