PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00394g13005.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

MYB_related

Protein Properties

Length: 115aa MW: 12827.9 Da PI: 3.8274

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00394g13005.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27	1.1e-08	15	43	1	29
TSSS-HHHHHHHHHHHHHTTTT-HHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIar 29 +g+WT eEd++l+++++ +G g W++ a+ Peinf101Scf00394g13005.1 15 KGPWTMEEDLILINYIANHGEGVWNSLAK 43 79************************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.64E-7	7	44	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.7E-13	7	46	IPR009057	Homeodomain-like
PROSITE profile	PS50090	7.306	10	57	IPR017877	Myb-like domain
Pfam	PF00249	3.1E-7	15	44	IPR001005	SANT/Myb domain
CDD	cd00167	3.74E-5	17	43	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 115 aa Download sequence Send to blast
MDKKPCNSQD AEVRKGPWTM EEDLILINYI ANHGEGVWNS LAKSAASSEQ NDHQEACTSQ 60 MSNGPNDNTI DQTYSPTSYS GNMDTFQAGP NFLTEANDNM WSMEDIWSMQ LLNGD

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU360893	1e-110	EU360893.1 Petunia x hybrida Myb-like transcription factor EOBII mRNA, complete cds.
GenBank	EU374207	1e-110	EU374207.1 Petunia x hybrida MYB-like protein NON1 mRNA, complete cds.
GenBank	JF793919	1e-110	JF793919.1 Petunia axillaris MYB transcription factor EOBII (EOBII) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Swissprot	P81391	4e-25	MYB05_ANTMA; Myb-related protein 305
TrEMBL	E0CJS3	3e-43	E0CJS3_PETHY; MYB-like protein NON1
TrEMBL	F5CSS2	3e-43	F5CSS2_PETAX; MYB transcription factor EOBII
TrEMBL	F5CSS3	3e-43	F5CSS3_9SOLA; MYB transcription factor EOBII
STRING	XP_002521453.1	2e-35	(Ricinus communis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G40350.1	1e-20	myb domain protein 24

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]