PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00394g09009.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family LBD
Protein Properties Length: 152aa    MW: 16960.5 Da    PI: 7.2076
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00394g09009.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260138.81.9e-4311109199
                    DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 
                               +CaaCk+lrrkC+++C++apyfp e+p kf nvhk+FGasnv+kll+++++++reda++sl+yeAear++dPvyG+vg i+ lq+
  Peinf101Scf00394g09009.1  11 PCAACKFLRRKCVPSCIFAPYFPPEEPIKFTNVHKVFGASNVSKLLNEIQPHQREDAVNSLAYEAEARLKDPVYGCVGAISVLQR 95 
                               7************************************************************************************ PP

                    DUF260  86 qleqlkaelallke 99 
                               q+ +l++el+++++
  Peinf101Scf00394g09009.1  96 QVIRLQKELDAINA 109
                               *********98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089127.06910111IPR004883Lateral organ boundaries, LOB
PfamPF031953.7E-4311107IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MASSSSYSNP PCAACKFLRR KCVPSCIFAP YFPPEEPIKF TNVHKVFGAS NVSKLLNEIQ  60
PHQREDAVNS LAYEAEARLK DPVYGCVGAI SVLQRQVIRL QKELDAINAD LMQYANYAES  120
RGAKNQMEIN ITMKLMELVA LEELSSITEG RC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A5e-6421152115LOB family transfactor Ramosa2.1
5ly0_B5e-6421152115LOB family transfactor Ramosa2.1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtNot known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Positively regulated within the shoot apex by both ASYMMETRIC LEAVES 1 (AS1) and ASYMMETRIC LEAVES 2 (AS2/LBD6) and by KNAT1. {ECO:0000269|PubMed:11934861}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015168799.11e-77PREDICTED: LOB domain-containing protein 25-like
RefseqXP_018625400.11e-77PREDICTED: LOB domain-containing protein 25-like isoform X2
SwissprotQ9FML44e-67LOB_ARATH; Protein LATERAL ORGAN BOUNDARIES
TrEMBLM1A9H43e-76M1A9H4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000178055e-77(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63090.42e-69LBD family protein
Publications ? help Back to Top
  1. Xu C, et al.
    Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration.
    Nat Plants, 2018. 4(2): p. 108-115
    [PMID:29358751]
  2. Liu J, et al.
    The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture.
    Plant Cell Physiol., 2018. 59(4): p. 734-743
    [PMID:29361138]