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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Peinf101Scf00384g05015.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family |
FAR1 |
Protein Properties |
Length: 579aa MW: 65490 Da PI: 7.9101 |
Description |
FAR1 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Peinf101Scf00384g05015.1 | genome | SGN | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | FAR1 | 89.5 | 4.5e-28 | 67 | 153 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86
fY+eYAk++GF++++++s++sk+++e+++++f Cs++g + e+++ ++r+ ++++t+Cka+++vk+++dgkw+v+++ +eHn
Peinf101Scf00384g05015.1 67 FYQEYAKSMGFTTSIKNSRRSKKSKEFIDAKFACSRYGVTPESDTG---TSRRPSVKKTDCKASMHVKRKRDGKWYVHEFIKEHN 148
****************************************999887...7788899***************************** PP
FAR1 87 Helap 91
Hel p
Peinf101Scf00384g05015.1 149 HELLP 153
**975 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 579 aa
Download sequence Send
to blast |
MVDHGDVVQS SLQVIGDMVD AADKAGHNRD GGVARSPKRS TTGVEGNADF EPHDGIEFES 60 HEAAYTFYQE YAKSMGFTTS IKNSRRSKKS KEFIDAKFAC SRYGVTPESD TGTSRRPSVK 120 KTDCKASMHV KRKRDGKWYV HEFIKEHNHE LLPALAYHFR IHRNVKLAEK NNIDILHAVS 180 ERTRKMYVEM SRQCGGNQES RYEEEAVADF DTLHKQPALK SPSPWEKQMS TIYTHAIFKK 240 FQVEVLGVVG CHPKKEGENG ENVTFRVDDC EKDENFMVTW NEARSDVSCS CLLYEYKGFL 300 CRHAMIVLQM CGLSSIPSQY ILKRWTKDAK TRQLMLEGTE KIQTRVQRYN DLCRRAIELG 360 EEGSLCEESY GIAFRVLDEA LKNCVNVNNR SSALTECSNS ALGLRDLEQD IQGIQATRIS 420 RKKNTNKKRK VHSETEAAIV EARGSLQQMV CSLAIYSVLR CILPCPYVPL HDKKCFQSDN 480 LRAGGMPLNG YYGTQQNMQG LVQLNLMEPP HEGYYVNQQN MQGLGQLNTI APSHDGFFGS 540 QQSIPGLGHL DFRQPSFTYG LQDEPLRAAQ LHGDSTRHA
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Functional Description ? help
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Source |
Description |
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269|PubMed:11889039, ECO:0000269|PubMed:12753585, ECO:0000269|PubMed:18033885, ECO:0000269|PubMed:22634759}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. {ECO:0000269|PubMed:18033885}. |
Publications
? help Back to Top |
- Domergue F, et al.
Three Arabidopsis fatty acyl-coenzyme A reductases, FAR1, FAR4, and FAR5, generate primary fatty alcohols associated with suberin deposition. Plant Physiol., 2010. 153(4): p. 1539-54 [PMID:20571114] - Heyndrickx KS,Vandepoele K
Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] - Wang C, et al.
SCAB3 Is Required for Reorganization of Actin Filaments during Light Quality Changes. J Genet Genomics, 2015. 42(4): p. 161-8 [PMID:25953354] - Wang W, et al.
A pair of light signaling factors FHY3 and FAR1 regulates plant immunity by modulating chlorophyll biosynthesis. J Integr Plant Biol, 2016. 58(1): p. 91-103 [PMID:25989254] - Ma L, et al.
Arabidopsis FHY3 and FAR1 Regulate Light-Induced myo-Inositol Biosynthesis and Oxidative Stress Responses by Transcriptional Activation of MIPS1. Mol Plant, 2016. 9(4): p. 541-57 [PMID:26714049] - Siddiqui H,Khan S,Rhodes BM,Devlin PF
FHY3 and FAR1 Act Downstream of Light Stable Phytochromes. Front Plant Sci, 2016. 7: p. 175 [PMID:26941752] - Liu L,Li B,Liu X
FAR-RED ELONGATED HYPOCOTYL3 promotes floral meristem determinacy in Arabidopsis. Plant Signal Behav, 2016. 11(10): p. e1238545 [PMID:27660915] - Ma L,Xue N,Fu X,Zhang H,Li G
Arabidopsis thaliana FAR-RED ELONGATED HYPOCOTYLS3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1) modulate starch synthesis in response to light and sugar. New Phytol., 2017. 213(4): p. 1682-1696 [PMID:27859295] - Liu Y, et al.
Light and Ethylene Coordinately Regulate the Phosphate Starvation Response through Transcriptional Regulation of PHOSPHATE STARVATION RESPONSE1. Plant Cell, 2017. 29(9): p. 2269-2284 [PMID:28842534] - Joly-Lopez Z, et al.
Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]
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