PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00384g05015.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family FAR1
Protein Properties Length: 579aa    MW: 65490 Da    PI: 7.9101
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00384g05015.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR189.54.5e-2867153291
                      FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 
                               fY+eYAk++GF++++++s++sk+++e+++++f Cs++g + e+++    ++r+ ++++t+Cka+++vk+++dgkw+v+++ +eHn
  Peinf101Scf00384g05015.1  67 FYQEYAKSMGFTTSIKNSRRSKKSKEFIDAKFACSRYGVTPESDTG---TSRRPSVKKTDCKASMHVKRKRDGKWYVHEFIKEHN 148
                               ****************************************999887...7788899***************************** PP

                      FAR1  87 Helap 91 
                               Hel p
  Peinf101Scf00384g05015.1 149 HELLP 153
                               **975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.4E-2567153IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.903276312IPR007527Zinc finger, SWIM-type
PfamPF044343.6E-6286311IPR007527Zinc finger, SWIM-type
SMARTSM005754.1E-8287314IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 579 aa     Download sequence    Send to blast
MVDHGDVVQS SLQVIGDMVD AADKAGHNRD GGVARSPKRS TTGVEGNADF EPHDGIEFES  60
HEAAYTFYQE YAKSMGFTTS IKNSRRSKKS KEFIDAKFAC SRYGVTPESD TGTSRRPSVK  120
KTDCKASMHV KRKRDGKWYV HEFIKEHNHE LLPALAYHFR IHRNVKLAEK NNIDILHAVS  180
ERTRKMYVEM SRQCGGNQES RYEEEAVADF DTLHKQPALK SPSPWEKQMS TIYTHAIFKK  240
FQVEVLGVVG CHPKKEGENG ENVTFRVDDC EKDENFMVTW NEARSDVSCS CLLYEYKGFL  300
CRHAMIVLQM CGLSSIPSQY ILKRWTKDAK TRQLMLEGTE KIQTRVQRYN DLCRRAIELG  360
EEGSLCEESY GIAFRVLDEA LKNCVNVNNR SSALTECSNS ALGLRDLEQD IQGIQATRIS  420
RKKNTNKKRK VHSETEAAIV EARGSLQQMV CSLAIYSVLR CILPCPYVPL HDKKCFQSDN  480
LRAGGMPLNG YYGTQQNMQG LVQLNLMEPP HEGYYVNQQN MQGLGQLNTI APSHDGFFGS  540
QQSIPGLGHL DFRQPSFTYG LQDEPLRAAQ LHGDSTRHA
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269|PubMed:11889039, ECO:0000269|PubMed:12753585, ECO:0000269|PubMed:18033885, ECO:0000269|PubMed:22634759}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. {ECO:0000269|PubMed:18033885}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754470.0HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009767065.10.0PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1 isoform X1
RefseqXP_009767066.10.0PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1 isoform X1
RefseqXP_016495821.10.0PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like isoform X1
RefseqXP_016495822.10.0PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like isoform X1
RefseqXP_016495823.10.0PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like isoform X1
RefseqXP_016495824.10.0PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like isoform X1
RefseqXP_016495825.10.0PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like isoform X1
RefseqXP_016495826.10.0PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like isoform X1
RefseqXP_016495827.10.0PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like isoform X1
SwissprotQ9SWG31e-140FAR1_ARATH; Protein FAR-RED IMPAIRED RESPONSE 1
TrEMBLA0A2G2X5B30.0A0A2G2X5B3_CAPBA; Protein FAR-RED IMPAIRED RESPONSE 1
STRINGXP_009767065.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49621103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15090.11e-127FAR1 family protein
Publications ? help Back to Top
  1. Domergue F, et al.
    Three Arabidopsis fatty acyl-coenzyme A reductases, FAR1, FAR4, and FAR5, generate primary fatty alcohols associated with suberin deposition.
    Plant Physiol., 2010. 153(4): p. 1539-54
    [PMID:20571114]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  3. Wang C, et al.
    SCAB3 Is Required for Reorganization of Actin Filaments during Light Quality Changes.
    J Genet Genomics, 2015. 42(4): p. 161-8
    [PMID:25953354]
  4. Wang W, et al.
    A pair of light signaling factors FHY3 and FAR1 regulates plant immunity by modulating chlorophyll biosynthesis.
    J Integr Plant Biol, 2016. 58(1): p. 91-103
    [PMID:25989254]
  5. Ma L, et al.
    Arabidopsis FHY3 and FAR1 Regulate Light-Induced myo-Inositol Biosynthesis and Oxidative Stress Responses by Transcriptional Activation of MIPS1.
    Mol Plant, 2016. 9(4): p. 541-57
    [PMID:26714049]
  6. Siddiqui H,Khan S,Rhodes BM,Devlin PF
    FHY3 and FAR1 Act Downstream of Light Stable Phytochromes.
    Front Plant Sci, 2016. 7: p. 175
    [PMID:26941752]
  7. Liu L,Li B,Liu X
    FAR-RED ELONGATED HYPOCOTYL3 promotes floral meristem determinacy in Arabidopsis.
    Plant Signal Behav, 2016. 11(10): p. e1238545
    [PMID:27660915]
  8. Ma L,Xue N,Fu X,Zhang H,Li G
    Arabidopsis thaliana FAR-RED ELONGATED HYPOCOTYLS3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1) modulate starch synthesis in response to light and sugar.
    New Phytol., 2017. 213(4): p. 1682-1696
    [PMID:27859295]
  9. Liu Y, et al.
    Light and Ethylene Coordinately Regulate the Phosphate Starvation Response through Transcriptional Regulation of PHOSPHATE STARVATION RESPONSE1.
    Plant Cell, 2017. 29(9): p. 2269-2284
    [PMID:28842534]
  10. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]