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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00383g01003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | TALE | ||||||||
Protein Properties | Length: 702aa MW: 76929.3 Da PI: 6.8373 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 29 | 1.9e-09 | 390 | 427 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + Peinf101Scf00383g01003.1 390 FEHflHPYPKDSDKMMLAKQTGLTRSQVSNWFINARVR 427 554459******************************88 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 1.7E-56 | 175 | 323 | IPR006563 | POX domain |
Pfam | PF07526 | 1.9E-48 | 182 | 321 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.147 | 368 | 431 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.55E-12 | 371 | 432 | No hit | No description |
SMART | SM00389 | 9.7E-10 | 371 | 435 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 6.42E-17 | 372 | 437 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.2E-28 | 374 | 437 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 3.8E-18 | 388 | 427 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009610 | Biological Process | response to symbiotic fungus | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0010197 | Biological Process | polar nucleus fusion | ||||
GO:0010201 | Biological Process | response to continuous far red light stimulus by the high-irradiance response system | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 702 aa Download sequence Send to blast |
MATYFQGNSD IQGTTNDGLQ TLILMNPTYV GFSDTQHHQS QQQQQGNNLV FFNSNHPGNS 60 MNLPHAPPPS QQQQQFVGIP LATTAFTAPS SSSQEGNTHS QHDISALHGF LARSQYGFYN 120 PANDITEARE LTRAQQQGLS LSLSSRLGNF RPEREELVTR VSPTGGGGGS SSSASGVQSV 180 PLSSKYLKAA QELLDEVVNV GKAVKTNSES AKGDDGKKSK DVGESSAAAA GDGQADGAAE 240 SSSKREGPEL STAERQEIQM KKAKLVNMLD EVEQRYRHYH HQMQSVISWL EQAAGIGSAK 300 TYTALALQTI SKQFRCLKDA IIGQIRSASK TLGEEDSLGG KIEGSRLKFV DNQIRQQRAL 360 QQLGMIQHNA WRPQRGLPER AVSVLRAWLF EHFLHPYPKD SDKMMLAKQT GLTRSQVSNW 420 FINARVRLWK PMVEEMYLEE TKEQEQNGSD HEKMSKGEQN EDSTSRSIAP QEKSPGSDSQ 480 NKSLISKQDN NLENHKPAST IAMSNTTSIS PTGISIRNHS GFNLIGSSEL ESFNITQGSP 540 KKPRSNEMLH SPNSVPSINM DVKHIEDRNE EPMTIKFGDD RQNRDGFSLM GGPTNFMGGF 600 GSYPIGEIGR FSTEQFSAPY SGSGTVALTL GLPHSENLSM SATHHSFLPT DGIQLGRRVE 660 IGEANEFGLN TPTSAHSTSV YENFNIQNRK RFAAPLLPDF VA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 2e-16 | 377 | 435 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 2e-16 | 377 | 435 | 5 | 63 | Homeobox protein Meis2 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019250358.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 1 | ||||
Swissprot | Q9SJ56 | 1e-165 | BLH1_ARATH; BEL1-like homeodomain protein 1 | ||||
TrEMBL | A0A1J6I7N5 | 0.0 | A0A1J6I7N5_NICAT; Bel1-like homeodomain protein 1 | ||||
STRING | XP_009787672.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1478 | 24 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35940.3 | 1e-143 | BEL1-like homeodomain 1 |
Publications ? help Back to Top | |||
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