PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00382g12002.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family bHLH
Protein Properties Length: 289aa    MW: 31950.6 Da    PI: 10.2121
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00382g12002.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.41.5e-1490136455
                               HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               +h  +ErrRR+++N++f  Lr+l+P       +K++Ka+iL  ++eY+k+L+
  Peinf101Scf00382g12002.1  90 NHVLAERRRREKLNERFIILRSLVPFV-----TKMDKASILGDTIEYVKQLR 136
                               7999**********************8.....8*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.68886135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.1E-1290135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-1990153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.7E-2090153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.08E-1590140No hitNo description
SMARTSM003534.3E-1892141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MGCISQTTQS AFTRWPSPST TVSSPFLDGG ATSGQWLLKS ILFSVPFLHT KYQTAAEVSP  60
KSRDATTVDS STASRFRKGC SITQEEPSGN HVLAERRRRE KLNERFIILR SLVPFVTKMD  120
KASILGDTIE YVKQLRKKVQ DLEARANQTE ATQQTKDTDE KGGTGTVKVL QGRGKRRMKI  180
VEGSVGGGQA KITASPPSTT HEGEIVQVEV SIIESDALVE LRCPYKEGLL LDVMQMLREL  240
KVEVVTIQSS LNNGGFFAEL RAKVKENIYG RKASILEVKK SIHQLIPRV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-1684139357Transcription factor MYC2
5gnj_B3e-1684139357Transcription factor MYC2
5gnj_E3e-1684139357Transcription factor MYC2
5gnj_F3e-1684139357Transcription factor MYC2
5gnj_G3e-1684139357Transcription factor MYC2
5gnj_I3e-1684139357Transcription factor MYC2
5gnj_M3e-1684139357Transcription factor MYC2
5gnj_N3e-1684139357Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19499ERRRRE
295100RRRREK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the control of flavonoid pigmentation. {ECO:0000269|PubMed:20949001}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2609180.0AF260918.1 Petunia x hybrida anthocyanin 1 (an1) gene, an1-V30 allele, complete cds.
GenBankAF2609190.0AF260919.1 Petunia x hybrida anthocyanin 1 (an1) mRNA, an1-V26 allele, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009803796.11e-156PREDICTED: basic helix-loop-helix protein A isoform X2
SwissprotE3SXU46e-88BHLHW_PEA; Basic helix-loop-helix protein A
TrEMBLQ9FEA10.0Q9FEA1_PETHY; Anthocyanin 1
STRINGXP_009803795.11e-156(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA90282022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.15e-52bHLH family protein
Publications ? help Back to Top
  1. Hellens RP, et al.
    Identification of Mendel's white flower character.
    PLoS ONE, 2010. 5(10): p. e13230
    [PMID:20949001]