PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00362g01004.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family LBD
Protein Properties Length: 241aa    MW: 26451.3 Da    PI: 9.2072
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00362g01004.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260133.39.9e-42521511100
                    DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 
                               +CaaCk+lrr+Ca++C+++pyf   +p+kfa+vhk+FGasnv+k+l +++e++r da++slvyeA++r+rdPvyG++g i++lqq
  Peinf101Scf00362g01004.1  52 PCAACKLLRRRCAEECPFSPYFSPLEPQKFAAVHKVFGASNVSKMLMEVSESQRADAANSLVYEANVRLRDPVYGCMGAISALQQ 136
                               7************************************************************************************ PP

                    DUF260  86 qleqlkaelallkee 100
                               q+++l+ael+++++e
  Peinf101Scf00362g01004.1 137 QVQTLQAELNAVRSE 151
                               ***********9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.69951152IPR004883Lateral organ boundaries, LOB
PfamPF031951.7E-4152149IPR004883Lateral organ boundaries, LOB
PRINTSPR000495.8E-6134150IPR017987Wilm's tumour protein
PRINTSPR000495.8E-6184198IPR017987Wilm's tumour protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016020Cellular Componentmembrane
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
LTFAFVNRER LDEIGKKFKK EMDTSTQQLH MQQMGRRHIL GPPGTTLNTI TPCAACKLLR  60
RRCAEECPFS PYFSPLEPQK FAAVHKVFGA SNVSKMLMEV SESQRADAAN SLVYEANVRL  120
RDPVYGCMGA ISALQQQVQT LQAELNAVRS EILRYKYREA ANTLIASTHT TLISTVAELP  180
QAPPTPTPPP PPPPPPPPPP SVVVVVTSSS PSPAPSNLYT PTSRARPNFS AIPNNNIPYF  240
D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-44451594118LOB family transfactor Ramosa2.1
5ly0_B3e-44451594118LOB family transfactor Ramosa2.1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00283DAPTransfer from AT2G30340Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027091064.11e-103LOB domain-containing protein 15-like isoform X1
SwissprotQ9AT618e-77LBD13_ARATH; LOB domain-containing protein 13
TrEMBLA0A2G2V4N51e-103A0A2G2V4N5_CAPBA; LOB domain-containing protein 15
STRINGSolyc06g082430.1.11e-101(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30340.13e-79LOB domain-containing protein 13
Publications ? help Back to Top
  1. Cho C,Jeon E,Pandey SK,Ha SH,Kim J
    LBD13 positively regulates lateral root formation in Arabidopsis.
    Planta, 2019. 249(4): p. 1251-1258
    [PMID:30627888]