![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Peinf101Scf00358g02010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
|
||||||||
Family | AP2 | ||||||||
Protein Properties | Length: 665aa MW: 73179 Da PI: 6.4069 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 34.2 | 6.1e-11 | 250 | 306 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + ++ k + g ++ +++Aa+a++ a++k++g Peinf101Scf00358g02010.1 250 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQTrKGRQ-GGYDKEDKAARAYDLAALKYWG 306 57*******************4444.2455535555.7799999*************98 PP | |||||||
2 | AP2 | 46.8 | 7.5e-15 | 349 | 400 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g Peinf101Scf00358g02010.1 349 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 400 57****************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.16E-14 | 250 | 316 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 7.77E-19 | 250 | 316 | No hit | No description |
Pfam | PF00847 | 1.4E-8 | 250 | 306 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.6E-11 | 251 | 315 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.3E-22 | 251 | 320 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.082 | 251 | 314 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.7E-6 | 252 | 263 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.85E-25 | 349 | 410 | No hit | No description |
SuperFamily | SSF54171 | 1.63E-17 | 349 | 409 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 9.3E-10 | 349 | 400 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.9E-18 | 350 | 408 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.177 | 350 | 408 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.7E-33 | 350 | 414 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.7E-6 | 390 | 410 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 665 aa Download sequence Send to blast |
MASSMNNWLG FSLSPHEELA SQTSQDQMSS SVVSAGECFD LTSHDDSCTL PSLNVVPHTP 60 FGIFEAFNRN HQSQDWNNDP NYKTTSEMSM LMASSCNTSQ HLENQEPPKL ENFLGIGEQK 120 LQQVCSNNNN NDDYNIYGST TNNISGSNTN NTIGLSMIKN WLRNNPTTTL SQDDKKEDGG 180 VGVVGGNANA QSLSLSMSTG GGGGVGGGGE NSCSSENNKQ QESVSNVDGQ SGAIEAVPRK 240 SIDTFGQRTS IYRGVTRHRW TGRYEAHLWD NSCRREGQTR KGRQGGYDKE DKAARAYDLA 300 ALKYWGPTTT TNFPISNYEK ELEDMKHMTR QEYVASLRRK SSGFSRGASI YRGVTRHHQH 360 GRWQARIGRV AGNKDLYLGT FSTQEEAAEA YDIAAIKFRG LNAVTNFEIN RYDVKSILES 420 STLPIGGAAK RLKDAEQAEI LALDYQRTSQ EISIGSAHLT NGTTIGSYGA NHCWPNIGFQ 480 QAQPLSMHYP YSQQRLWCKQ EVQDSDHMTP QNFQDFQLGN GHNFLQPTSA LHNLMGLDNS 540 SSMEHNNVTY HQGVGSYGTS TQHAGFVLPQ LSSVIAHQES NCQANGYGEN HEVKQQLGSD 600 NMFGNLYYHS QQSSSNGSVK AGLYDHQESA CNNWMSTAVP TLASRNSTMA ICHGAAPTFT 660 VWNDT |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00610 | ChIP-seq | Transfer from AT5G17430 | Download |
![]() |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016452614.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor AIL1 | ||||
TrEMBL | A0A1S3YK47 | 0.0 | A0A1S3YK47_TOBAC; AP2-like ethylene-responsive transcription factor AIL1 | ||||
STRING | XP_009610983.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7099 | 21 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G17430.1 | 1e-140 | AP2 family protein |