PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

WOX

Protein Properties

Length: 201aa MW: 23257.4 Da PI: 9.7493

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00356g00027.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	66.7	3e-21	10	69	3	57
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++tkeq++ Le+l+++ r+psae++++++++l +++ ++V++WFqN++a++++ Peinf101Scf00356g00027.1 10 SRWNPTKEQIDLLENLYKQgIRTPSAEQIQQITMRLkafgHIEGKNVFYWFQNHKARQRQ 69 7***************99************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	10.981	5	70	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.87E-13	7	77	IPR009057	Homeodomain-like
SMART	SM00389	3.2E-6	7	74	IPR001356	Homeobox domain
Pfam	PF00046	6.3E-19	10	69	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	8.1E-9	10	69	IPR009057	Homeodomain-like
CDD	cd00086	1.34E-6	11	71	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence Send to blast
MNDNMSPTGS RWNPTKEQID LLENLYKQGI RTPSAEQIQQ ITMRLKAFGH IEGKNVFYWF 60 QNHKARQRQK QKQDHIAYKF NRFLHRTCVF PPSCPKVVCS PYYAPQSDLG FYQQCSVPRI 120 ILRGPGVFIR RRAACDAPAV YVGTNDANDH CQETSGMVEH LSPNAKQYNT NINQETLNLF 180 PLHPTGVLQE RTSTTRHKLF F

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in embryonic patterning. Required for apical embryo development after fertilization. Its specific localization to the apical daughter cell of the zygote, while WOX8 is confined to the basal cell, suggests that the asymmetric division of the plant zygote separates determinants of apical and basal cell fates. {ECO:0000269\|PubMed:14711878}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016453563.1	2e-91	PREDICTED: WUSCHEL-related homeobox 2-like
Swissprot	Q6X7K1	2e-46	WOX2_ARATH; WUSCHEL-related homeobox 2
TrEMBL	A0A1S3YN92	6e-90	A0A1S3YN92_TOBAC; WUSCHEL-related homeobox 2-like
STRING	XP_009758504.1	2e-90	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11414	19	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G59340.1	7e-49	WUSCHEL related homeobox 2

Publications ? help Back to Top
Liang Z,Brown RC,Fletcher JC,Opsahl-Sorteberg HG Calpain-Mediated Positional Information Directs Cell Wall Orientation to Sustain Plant Stem Cell Activity, Growth and Development. Plant Cell Physiol., 2015. 56(9): p. 1855-66 [PMID:26220906] Zhu T,Moschou PN,Alvarez JM,Sohlberg JJ,von Arnold S WUSCHEL-RELATED HOMEOBOX 2 is important for protoderm and suspensor development in the gymnosperm Norway spruce. BMC Plant Biol., 2016. 16: p. 19 [PMID:26786587] Zhang Z,Tucker E,Hermann M,Laux T A Molecular Framework for the Embryonic Initiation of Shoot Meristem Stem Cells. Dev. Cell, 2017. 40(3): p. 264-277.e4 [PMID:28171749]