PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

HD-ZIP

Protein Properties

Length: 194aa MW: 22095.2 Da PI: 8.3933

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00345g05019.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.8	1.9e-18	47	101	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tk q Lee F+++ +++ ++++eLA++l+L rqV vWFqNrRa+ k Peinf101Scf00345g05019.1 47 RKKLRLTKAQSAFLEESFKQHINLNPKQKQELARELNLRPRQVEVWFQNRRARTK 101 678899***********************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.78E-19	33	104	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.7E-17	41	106	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.346	43	103	IPR001356	Homeobox domain
SMART	SM00389	1.4E-15	45	107	IPR001356	Homeobox domain
Pfam	PF00046	5.2E-16	47	101	IPR001356	Homeobox domain
CDD	cd00086	7.17E-16	47	104	No hit	No description
PROSITE pattern	PS00027	0	78	101	IPR017970	Homeobox, conserved site
Pfam	PF02183	7.2E-9	103	137	IPR003106	Leucine zipper, homeobox-associated
SMART	SM00340	6.3E-20	103	146	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence Send to blast
MSFDDICATN LVLGLGSSCA TSSYTNIASV KRERDLSYED DDGSNGRKKL RLTKAQSAFL 60 EESFKQHINL NPKQKQELAR ELNLRPRQVE VWFQNRRART KLKQTEVDCE LLKECCETLK 120 EENMKLQKEL QELKALKLAQ PMYMQLPTPT LITMCPSCQR IGSVGENSSK DHFTMAQKSH 180 FYSSTSFTNP SAAC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	95	103	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016486665.1	2e-89	PREDICTED: homeobox-leucine zipper protein HAT22-like
Swissprot	P46603	2e-70	HAT9_ARATH; Homeobox-leucine zipper protein HAT9
TrEMBL	A0A1S4BCK6	4e-88	A0A1S4BCK6_TOBAC; homeobox-leucine zipper protein HAT22-like
STRING	XP_009775231.1	4e-88	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA290	24	186

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22800.1	3e-48	HD-ZIP family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]