PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00331g03006.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family bHLH
Protein Properties Length: 527aa    MW: 58115.9 Da    PI: 6.9557
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00331g03006.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.51.2e-133533931055
                               HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               +rRRdriN+++  L+ellP++     +K +Ka++L +A+eY+ksLq
  Peinf101Scf00331g03006.1 353 QRRRDRINEKMKALQELLPHS-----TKTDKASMLDEAIEYLKSLQ 393
                               79******************9.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.31E-14338397No hitNo description
PROSITE profilePS5088814.5343392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-12349398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.3E-11353393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-15353417IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.8E-16353401IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0010161Biological Processred light signaling pathway
GO:0010244Biological Processresponse to low fluence blue light stimulus by blue low-fluence system
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0010928Biological Processregulation of auxin mediated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 527 aa     Download sequence    Send to blast
MDGLFYSFDH ELVELLWRNG EVVLHSQTHK KPGYDPNDCR LVNKHDQSTI RTAVSCGNQT  60
NLIQDDETIS WLNCPIDDPF DREFCSPFLS EISTNPIEAD KITRQSEDNK VFKFDPFEVN  120
HVLPHSHHSG FDPNPMPPPR YHNSGSAQQQ HVGGLQKGVN FPTPVRSSNV QLGGKEVSNM  180
MLHDVKEGSV MTVGSSHCGS NQVANDIDTS RFSSSTNRGL STAMITDYTG KVSPQSDTMD  240
RDTFEPANTS SSGGSGSSYA RTCNQSTATN SHSHKRKSRE GEEPECQSKS GDLDSAGGNK  300
SAQKSGTARR SRAAEVHNLS ERVEFVGLTV IYIHVMASCK EKHLNHQMAL SLQRRRDRIN  360
EKMKALQELL PHSTKTDKAS MLDEAIEYLK SLQMQLQMMW MGGGMASMMF PGVQHYMSRM  420
GIGMGPPTVS SIHNAMNLAR LPLVDPPIPL PQAAPNQAAM CQTSMLNAVN FQRHLQNPNF  480
SDQYASYMGF HPLQGASQPI NIFSLGSHSA QQSQQIPPPT NSTAPTT
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00606ChIP-seqTransfer from AT2G43010Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0135820.0BT013582.1 Lycopersicon esculentum clone 132330F, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016580439.10.0PREDICTED: transcription factor PIF4
TrEMBLA0A1U8HIU30.0A0A1U8HIU3_CAPAN; Uncharacterized protein
TrEMBLA0A2G2Z1M50.0A0A2G2Z1M5_CAPAN; transcription factor PIF4
STRINGSolyc07g043580.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA104652226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43010.22e-38phytochrome interacting factor 4