 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Peinf101Scf00306g06009.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
|
| Family |
NAC |
| Protein Properties |
Length: 299aa MW: 34302.9 Da PI: 10.3252 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Peinf101Scf00306g06009.1 | genome | SGN | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 129.8 | 2e-40 | 124 | 236 | 8 | 128 |
NAM 8 hPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92
Ptdeel+++yL+++++ +++++ ++i+evd+yk++Pw+Lp +k+ yfFs rd+ky++g r+n+a+ sgyWk tg+ k++
Peinf101Scf00306g06009.1 124 YPTDEELIMYYLCNQATLRPCPV-SIIPEVDVYKFDPWELP------KKKRYFFSLRDRKYPNGIRPNKAVVSGYWKDTGTCKAI 201
5**********************.89**************9......3678********************************** PP
NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
+s +++ vg+kk Lvfykgr pkg ktdW++heyrl
Peinf101Scf00306g06009.1 202 HS-GSKYVGIKKALVFYKGRPPKGIKTDWIIHEYRL 236
*9.99*****************************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 299 aa
Download sequence Send
to blast |
MWSLRLTTVA LPHFAIVPTA AKQQQQPLQR PNSKTQNGKQ KITTTTNPNL QSNIKKTKQG 60
FDSKNKEPTW QCVKNCGACC KLDKGPIAST TFPFPISVRS IITGCYRCRS AIVVAAPKSF 120
LLTYPTDEEL IMYYLCNQAT LRPCPVSIIP EVDVYKFDPW ELPKKKRYFF SLRDRKYPNG 180
IRPNKAVVSG YWKDTGTCKA IHSGSKYVGI KKALVFYKGR PPKGIKTDWI IHEYRLSESK 240
SQPTRPNDSM KLDDWVIYRI SYHSITFFWK SSNHLIKLLI KMYSKTESNI ANDMSSHFI
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 5e-50 | 114 | 260 | 15 | 162 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 5e-50 | 114 | 260 | 15 | 162 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 5e-50 | 114 | 260 | 15 | 162 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 5e-50 | 114 | 260 | 15 | 162 | NO APICAL MERISTEM PROTEIN |
| 4dul_A | 5e-50 | 114 | 260 | 15 | 162 | NAC domain-containing protein 19 |
| 4dul_B | 5e-50 | 114 | 260 | 15 | 162 | NAC domain-containing protein 19 |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | EU162750 | 2e-37 | EU162750.1 Petunia integrifolia subsp. inflata haplotype S1 S-locus F-box-like protein c (SLFLc) gene, promoter region. |
