PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Peinf101Scf00305g06010.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

FAR1

Protein Properties

Length: 333aa MW: 38931.6 Da PI: 10.02

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00305g06010.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	33	1.9e-10	55	114	17	78
FAR1 17 skskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwev 78 ++s+++++i+ ++f Cskeg++ +++ + ++++r etr gCk ++ k+k +gkw Peinf101Scf00305g06010.1 55 VVISRSRKDKSIIGQEFICSKEGFHLKKSLE---SNQQRDETRQGCKVMIYFPKKKeEGKWIF 114 556789999**************999877...9999***********9998899976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.5E-8	53	115	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 333 aa Download sequence Send to blast
MGVGGSEEEF EGDMSTNIVP LNSQLSDEES RAPYISTKFQ SLDTHLNFIL NMRIVVISRS 60 RKDKSIIGQE FICSKEGFHL KKSLESNQQR DETRQGCKVM IYFPKKKEEG KWIFQEELII 120 SQKFVSEKIE VKDGMNIYKV HEFQQQKSEY IIRLNLDLKN IACSDGIYKE INPFTSTMLS 180 TRSFATKEKF VDVSHEQHNL KPSTVWFNNI MVHSLGIFER ATRSRKHYKF SYKKILQLSK 240 ELDELPYEFE DNNVWSGQVN ESNMELNLES KHYLLYPPRA ANKERPRSLR MKGGLKSSRK 300 VKRVLLKNQK GKSKAQRNER EQAQALKLKC NIK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025883762.1	8e-61	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_025886302.1	4e-59	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	D5MNY4	2e-59	D5MNY4_SOLLC; Transposon-like element Lyt2.0 DNA
TrEMBL	D5MNY5	2e-59	D5MNY5_SOLLC; Transposon-like element Lyt2-1 DNA
STRING	Solyc01g110070.1.1	2e-58	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA645	8	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	6e-13	FAR1 family protein