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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00288g15018.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | C3H | ||||||||
Protein Properties | Length: 339aa MW: 38688.7 Da PI: 7.7856 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 28.9 | 2e-09 | 92 | 116 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+ C f++ GtC+ G+ C+FaHg Peinf101Scf00288g15018.1 92 YKTRMCAKFLE-GTCRNGEHCSFAHG 116 9**********.*************9 PP | |||||||
2 | zf-CCCH | 25.7 | 2e-08 | 153 | 175 | 3 | 25 |
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 +++C+ f+ + +C+yGd+C+F H Peinf101Scf00288g15018.1 153 MKICKKFYNGEECPYGDKCNFLH 175 579******66************ PP | |||||||
3 | zf-CCCH | 35.7 | 1.4e-11 | 228 | 253 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++ drC+FaHg Peinf101Scf00288g15018.1 228 WKTKICSKWETTGQCPFRDRCHFAHG 253 8************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 3.1E-15 | 88 | 124 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.24E-9 | 89 | 122 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.347 | 91 | 118 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.0E-4 | 91 | 117 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.8E-6 | 92 | 116 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0027 | 150 | 177 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.32E-7 | 150 | 177 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.089 | 150 | 178 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.1E-8 | 153 | 176 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.0E-6 | 153 | 175 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.4E-16 | 223 | 259 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.58E-10 | 224 | 259 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.3E-5 | 227 | 254 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.995 | 227 | 255 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.7E-7 | 228 | 253 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 339 aa Download sequence Send to blast |
MSFSDPPPPL PPFMQMPFAG SGDNIGGFWP QSPINHELPE ESYSQFEHAP PFKRPRNFDS 60 ISPNSAMFPP MNNSRVNPPN LPGSKGTSHI FYKTRMCAKF LEGTCRNGEH CSFAHGVEDL 120 REPPPNWQDI VREKDRGGSA GNWNDDQKII HRMKICKKFY NGEECPYGDK CNFLHERPPK 180 FKTDIPRQRE SSAISIGTTG NRSDSEQIDI SKHGNVDSDP LRIKPIYWKT KICSKWETTG 240 QCPFRDRCHF AHGHSELQVP SGRIETEMLT NSVPIMPRPF YVPHAELSST NAVDNALTQE 300 EKEDKKILKW KLTKKINRIY ADWIDDLVLP NLIHSKAES |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006340244.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 39-like | ||||
Swissprot | Q9LT81 | 5e-83 | C3H39_ARATH; Zinc finger CCCH domain-containing protein 39 | ||||
TrEMBL | M1CEA9 | 0.0 | M1CEA9_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400065585 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6553 | 24 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19360.1 | 9e-77 | C3H family protein |