PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00287g17023.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | B3 | ||||||||
Protein Properties | Length: 900aa MW: 97923.6 Da PI: 6.9067 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 59.2 | 7e-19 | 332 | 431 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvv 81 f+kvl+ sd+++ grlvlpk++ae++ ++++ + l+++d++g +W++++++ +++s++yvl+ G ++ +L++gD+v+ Peinf101Scf00287g17023.1 332 FEKVLSASDAGRIGRLVLPKRCAEAYfpPISNPDGLPLKVQDLKGTEWNFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDIVT 415 99**************************444456667***************9989999999***9.****************** PP EEE-SSSEE..EEEEE- CS B3 82 Fkldgrsefelvvkvfr 98 F++++ +++lv++ ++ Peinf101Scf00287g17023.1 416 FSRIE-PDGKLVMGCRK 431 **987.77767776665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.0E-31 | 328 | 440 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.15E-20 | 329 | 428 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.07E-24 | 330 | 431 | No hit | No description |
PROSITE profile | PS50863 | 10.884 | 332 | 433 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.4E-16 | 332 | 431 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 8.8E-23 | 332 | 432 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS51050 | 12.888 | 578 | 634 | IPR011124 | Zinc finger, CW-type |
Pfam | PF07496 | 1.5E-10 | 590 | 631 | IPR011124 | Zinc finger, CW-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 900 aa Download sequence Send to blast |
MSSSAKACCF NANCKELVEV PKKGWRRRTG EFADLCDRCA SAYDDGKFCE TFHLNSSGWR 60 SCESCGKQIH CGCIVSFHTF VLLDAGGIEC LSCARKSFIL TPNPAWPPPS LFLPLQPERI 120 KDVNNWNPIA GSGPVPWRQA PSLFNGSTIQ NEMQPRTPFI DATGSVDRLC LSERLSASSS 180 DNNRKDPCEK LMNGKLKIGV PGILENGYAG LNCEEPTKSC LSAPRQLSFV KNDLSTPSFS 240 LTIGSSCKNE PTDHNNVSAS LPQQATLPTP LGKQPSGHAT VDSAGETQVR NSKSRGDGRG 300 KHHLLPRYWP RITDRELQQI SGDSNSVITP LFEKVLSASD AGRIGRLVLP KRCAEAYFPP 360 ISNPDGLPLK VQDLKGTEWN FQFRFWPNNN SRMYVLEGVT PCIQSMQLQA GDIVTFSRIE 420 PDGKLVMGCR KASTAEQGSE ACSNSNGVVT NGNVNTKSNK LSEEVLANST KKGSSSIPHV 480 AMADSTSARV EIKISDDMVK ESLGNNFSVP CKRKSSTLGS KSKRMRIENE ALLELKVTVV 540 QAQELMRPPS SDAPTVIVVE GCEFEEYEDA PIIGRPTIPS MDYLGEKIQL VQCEDCFKWR 600 KVPDSALLPS RWTCSENSWD PERSVCSAVQ ELTADHLRDL LPHINKAAKK MKASKQETDL 660 VEALDGLDAL ANLAILEEGS LPASSQATTK HPRHRPGCTC IVCIQPPSGG PKHKQSCDCI 720 VCKSVKRRFK TLMLKREQKL SEKEAEAACQ KLQPQLAGQL LDADDIQESM DEAGHVSPQH 780 GELKNEGYVE DLNSLNEKKS SASPLKGEID LNAKPERDDE LSPGSDSGSM MRILQDAAEQ 840 YVRHCGNGNL AGTKKNGNGA GETNPSNCII VGGSQTDVGH NRPFSIGTAA SLAPNDPLDT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9a_A | 4e-64 | 310 | 435 | 2 | 127 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016514250.1 | 0.0 | PREDICTED: B3 domain-containing protein Os07g0563300-like isoform X2 | ||||
TrEMBL | A0A1S4DLG5 | 0.0 | A0A1S4DLG5_TOBAC; B3 domain-containing protein Os07g0563300-like isoform X2 | ||||
STRING | XP_009794882.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7128 | 21 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30470.1 | 1e-152 | high-level expression of sugar-inducible gene 2 |