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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00264g08021.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 763aa MW: 83866.9 Da PI: 5.6159 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.9 | 9.8e-20 | 91 | 146 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++e+e++F+++++p+ ++r+eL ++lgL+ qVk+WFqN+R++ k Peinf101Scf00264g08021.1 91 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELGRQLGLDPLQVKFWFQNKRTQTK 146 678899***********************************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-21 | 75 | 142 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 9.19E-19 | 80 | 148 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.568 | 88 | 148 | IPR001356 | Homeobox domain |
SMART | SM00389 | 9.7E-19 | 89 | 152 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 2.1E-17 | 91 | 146 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.23E-18 | 91 | 149 | No hit | No description |
SuperFamily | SSF55961 | 2.2E-35 | 272 | 503 | No hit | No description |
PROSITE profile | PS50848 | 42.711 | 272 | 504 | IPR002913 | START domain |
CDD | cd08875 | 7.14E-122 | 276 | 500 | No hit | No description |
SMART | SM00234 | 7.8E-57 | 281 | 501 | IPR002913 | START domain |
Pfam | PF01852 | 1.6E-50 | 282 | 501 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 3.0E-5 | 377 | 470 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 2.06E-21 | 521 | 746 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 763 aa Download sequence Send to blast |
MEMPAGTMQL PVNMIANDGN NVNFAPAAAG LAPVQSNGMM EGQHHSMDMA SYTSESEFML 60 DQELDRKSGS DNQEGKSGDD EQADANQRAK KKRYHRHTQH QIQEMEAFFK ECPHPDDKQR 120 KELGRQLGLD PLQVKFWFQN KRTQTKNHHE HNENALLRAE NEKFKAENVQ LREALNNAAL 180 CPTCRCPTNN LGEMSFAEHS LKLENDRLTE EVHRISAIAA KFVGKPVSTF NVYSPPVTPP 240 PFDLGVQPYS AQHNVIGDAY GNGGERIISG PTEAEKPFII ELAVAAMEEL IQMANMGEPL 300 WLPSIDSGSY FLNEDEYARI FPRGIGPKPD GFKTEASKET AVVIMNHINL VEIFMDVNHW 360 SSMFSNIVSK AVTLDVLSTG VAGNFNGALQ VIFAEFQVPS PQIPTRDCYF VRYCKRSVDG 420 IWAIVDVSLD HLRGNLTARC RRRPSGCLIQ EMPNGYSKVT WIEHIDADDT VIHDIYKPLV 480 NYGLAFGAKR WLAILDRQCE RLASAMATII PNNDIRNMVI STQEARKSTL KLTERMVISF 540 CSGASATTAH QWTTLSGSGL DSDVRIMTRK SIDDPGKPSG IVLSAATSFW LPICTERVFN 600 FLRDESTRSK WDILSNGGIV QEMAHIANGR ENGNCVSLLR VTSENSSQSN MLILQESSTD 660 PTGSFVVYAP VDVAAMNIVL GGGEPDYVAL LPSGFAILPD GPPGNSGITA GSGGSLLTVA 720 FQILVDSVPT AKLSLGSVAT VNNLIACTVS REGAVRTNWQ EIK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009766038.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HDG2-like | ||||
Refseq | XP_016447957.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HDG2-like | ||||
Swissprot | Q94C37 | 0.0 | HDG2_ARATH; Homeobox-leucine zipper protein HDG2 | ||||
TrEMBL | A0A1S3Y7I3 | 0.0 | A0A1S3Y7I3_TOBAC; homeobox-leucine zipper protein HDG2-like | ||||
TrEMBL | A0A1U7VI76 | 0.0 | A0A1U7VI76_NICSY; homeobox-leucine zipper protein HDG2-like | ||||
STRING | XP_009766038.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA932 | 24 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G05230.4 | 0.0 | homeodomain GLABROUS 2 |