PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00258g12012.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | FAR1 | ||||||||
Protein Properties | Length: 482aa MW: 55624.1 Da PI: 9.5291 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 44.6 | 4.8e-14 | 54 | 136 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 kfY +Y ++ GFsvrk++ ++s+++++i++++fv ske +r++++ + ++++r et +Ck ++ ++k+++ +++ H Peinf101Scf00258g12012.1 54 KFYLNYVHRSGFSVRKNRISRSRKDKSIISQEFVYSKERFRSKKSLE---SSQQRDETGEDCKVMIYLSKKEERCGRIS----CH 131 6*****************************************99877...9999*****************77777765....69 PP FAR1 86 nHela 90 nHela Peinf101Scf00258g12012.1 132 NHELA 136 99996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.7E-11 | 54 | 136 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 482 aa Download sequence Send to blast |
DKLANSNLPN QDIEGVGDSL EEFEGDIVID ILGDEEPRAP YIGMEFQSLD TAFKFYLNYV 60 HRSGFSVRKN RISRSRKDKS IISQEFVYSK ERFRSKKSLE SSQQRDETGE DCKVMIYLSK 120 KEERCGRISC HNHELASPHS QKFMRSKSKK SEAQKNLIDL LDISGVRPTQ YDKAVDARYD 180 KVREKDFKTK DSKAKLKTLY PMEDEAAKAY PRKIFKIFQE ELTMSQKFVK DGMRIYKVHE 240 FQQQKLEYIV RLNLELKNNA CSDGIYKVPP CYLLDRWTIF ATKKKFVEVS HEQHNLKPST 300 VWFNNIMVHS LGISERATRS RKHYKFAYQK LLQLSKELDE LPYEFEDVNV CDGQVNESNV 360 ELNLGEQSQN VTLLDPLRAA TKGRPRSLRM KVLGRPKEIL LKNKRAKPEA QRSAREQVCS 420 SSSKAEVESR STETPLRAAP TMSYSGSQGQ NDNGSGYPTS FTVGLLVPDL MRASSYPYRQ 480 DF |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC238909 | 6e-73 | AC238909.6 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-131f15 map 1, complete sequence. | |||
GenBank | AC245726 | 6e-73 | AC245726.3 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone slm-44p6 map 10, complete sequence. | |||
GenBank | AC246156 | 6e-73 | AC246156.5 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-18l8 map 1, complete sequence. | |||
GenBank | AC246211 | 6e-73 | AC246211.4 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-41e4 map 1, complete sequence. | |||
GenBank | HG975513 | 6e-73 | HG975513.1 Solanum lycopersicum chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025883762.1 | 1e-106 | protein FAR1-RELATED SEQUENCE 5-like | ||||
Refseq | XP_025886302.1 | 1e-104 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A2G3CXF4 | 1e-112 | A0A2G3CXF4_CAPCH; Uncharacterized protein | ||||
STRING | Solyc01g110070.1.1 | 1e-107 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA645 | 8 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 3e-11 | FAR1-related sequence 5 |