PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00244g19034.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | MYB_related | ||||||||
Protein Properties | Length: 229aa MW: 26252.5 Da PI: 4.5701 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.1 | 1e-08 | 39 | 69 | 1 | 31 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartm 31 rg+WT eEd l++ ++ +G g+W++ ar+ Peinf101Scf00244g19034.1 39 RGPWTVEEDFTLINFIAHHGEGRWNSLARCA 69 89**************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 7.143 | 34 | 72 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 1.48E-7 | 36 | 72 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.3E-9 | 37 | 72 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.1E-6 | 39 | 68 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.01E-5 | 41 | 72 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MDHHHKTKVG LGRRGEDYRT SNVMNQENIR EEDIMDLRRG PWTVEEDFTL INFIAHHGEG 60 RWNSLARCAV ERIQAAATMA ATSSTTTNTY IQNQENQQSV PNMSHMSQFL PIQLENHEKT 120 NNINHSSMTL TFENSSTTTS SDNSIGRQVS PTSDLSDYCY NFPINQSSNN QDYTPFNQNY 180 GDSLISATGY IPQAMDQQNS HWVDGEYVSD NSWNIEDMWF LQQQLNNNL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009621085.1 | 7e-44 | PREDICTED: transcription factor MYB108-like | ||||
Refseq | XP_016479574.1 | 7e-44 | PREDICTED: transcription factor MYB108-like | ||||
TrEMBL | A0A1S4ASB2 | 2e-42 | A0A1S4ASB2_TOBAC; transcription factor MYB108-like | ||||
STRING | XP_009621085.1 | 3e-43 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49620.2 | 8e-18 | myb domain protein 78 |