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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00244g18025.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | WRKY | ||||||||
Protein Properties | Length: 302aa MW: 33685.6 Da PI: 6.8577 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 103.7 | 9.9e-33 | 137 | 195 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYGqK vk+s+fprsYYrCt+ +C vkk+vers +d+++v++tYeg+H+h+ Peinf101Scf00244g18025.1 137 LDDGFRWRKYGQKAVKNSPFPRSYYRCTTVSCGVKKRVERSLKDTSIVVTTYEGTHTHT 195 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.4E-33 | 122 | 197 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.7E-28 | 129 | 197 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.826 | 132 | 197 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.5E-37 | 137 | 196 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.1E-25 | 138 | 194 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009624 | Biological Process | response to nematode | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 302 aa Download sequence Send to blast |
MEKENKLKAD TSLENSIFSL PNIFDIPYET EKDSLDMLET MFGVYNQDYT TTSYISDLLF 60 MPCQPEAMPF TTNSTVQESC EVVNTPATPN LSCISSSSTE VADDDQNIRA LRPKKKNQKT 120 PREPRFAFMT KSEIDHLDDG FRWRKYGQKA VKNSPFPRSY YRCTTVSCGV KKRVERSLKD 180 TSIVVTTYEG THTHTCPTRP SRSIGFPPGT TTYGGAIGGY SGGETYSNAA LSIPQHHYPS 240 TTLPLNLCAG GYNSSLATIN SLQEGRFSPS HYSSSLARDN GLLHDMVPSQ IRRDLKEEYV 300 GN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 4e-27 | 127 | 197 | 7 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 4e-27 | 127 | 197 | 7 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00069 | PBM | Transfer from AT2G47260 | Download |
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Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975444 | 2e-35 | HG975444.1 Solanum pennellii chromosome ch05, complete genome. | |||
GenBank | HG975517 | 2e-35 | HG975517.1 Solanum lycopersicum chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019236030.1 | 1e-106 | PREDICTED: probable WRKY transcription factor 23 | ||||
TrEMBL | A0A1J6K2J0 | 1e-105 | A0A1J6K2J0_NICAT; Putative wrky transcription factor 23 | ||||
STRING | XP_009621692.1 | 1e-102 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1309 | 24 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47260.1 | 5e-51 | WRKY DNA-binding protein 23 |