PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00222g01018.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family HB-PHD
Protein Properties Length: 725aa    MW: 81931.8 Da    PI: 9.1715
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00222g01018.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.75.5e-105095491353
                               HHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
                  Homeobox  13 eeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                               + L  +F++n  ps++ re+L+++l+L+ ++V  WF+N R+
  Peinf101Scf00222g01018.1 509 QKLRCVFAENELPSRAVREDLSNQLSLEFEKVNKWFKNARY 549
                               679999**********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579031.37E-13220286IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.107.9E-11224284IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.042226283IPR019787Zinc finger, PHD-finger
SMARTSM002495.4E-9228281IPR001965Zinc finger, PHD-type
PfamPF006289.2E-9228283IPR019787Zinc finger, PHD-finger
PROSITE patternPS013590229280IPR019786Zinc finger, PHD-type, conserved site
CDDcd155041.88E-29229280No hitNo description
SMARTSM003894.4E-4492558IPR001356Homeobox domain
SuperFamilySSF466894.11E-8507558IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-8509548IPR009057Homeodomain-like
CDDcd000862.58E-6509549No hitNo description
PfamPF000461.7E-7509549IPR001356Homeobox domain
PROSITE profilePS5007110.673511554IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 725 aa     Download sequence    Send to blast
MSHSKLLTTM PGKAKKDKHK AVASSSQIKD ELRRLDKKRS KLKSKSHRMA THSSSSKKTV  60
TGEGKAKGSS GKNILKEEIQ QKAKSSKKRS PLSCQGEKHQ ACNSKDNLKH ENLDTGSEKL  120
KRRRKKKMRK RNADPDDVSR LQRRTRYLLI KMKLEQNLID AYSAEGWKGQ SREKIRPERE  180
LQRAKKQILT CKLGIREIVH RLHLLSSAGQ IDDSVIAPDG SVHHQHIICA KCKLHEAFPD  240
DDIILCDGTC NCAFHQKCLD PPLLTENIPP GDEGWFCKFC KCKMEIIEAT NAHIGTHFAM  300
DSNWEDIFKE EALLPEGGES LLCPEQDWPS DDSEDDDYDP EKIANSDSTD SFESGSSSEA  360
SSASMLGSLE DELLALTGKL ENGRCGKDYL SERNAGSDYE ETTDFEVLSG PRQRKTVDYI  420
KLNDEMFGKH APAIEQNSED EDWDPTKRKR KRKESESDAA STLITLCGSE RSCPEKGTTE  480
VEKESSCKPA KREIFRLPPN AVESSVLYQK LRCVFAENEL PSRAVREDLS NQLSLEFEKV  540
NKWFKNARYT ALKARKVENT KPCQVTSPTT SEGCVSETVK GKLTEQISSR DAEENAAQAA  600
KDLKRSPNEE TARLVIRPSK KKHDKKAKKL SVGKAETNVD FGDDVSLKLL RERAKKERRK  660
LNSKGRERIQ KAEAEMQKLC KIKDKIERLQ NILSRLPKRR FRRGDASSSD ESSVIFVPIA  720
ELQEK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1119126LKRRRKKK
2121129RRRKKKMRK
3122128RRKKKMR
4446452KRKRKRK
5447452RKRKRK
6447453RKRKRKE
7694699RLPKRR
Functional Description ? help Back to Top
Source Description
UniProtSpecifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By pathogen infection.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754461e-127HG975446.1 Solanum pennellii chromosome ch07, complete genome.
GenBankHG9755191e-127HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015080840.10.0pathogenesis-related homeodomain protein isoform X2
SwissprotP487851e-145PRH_ARATH; Pathogenesis-related homeodomain protein
TrEMBLA0A3Q7H4G00.0A0A3Q7H4G0_SOLLC; Uncharacterized protein
STRINGSolyc07g008730.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA106842123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.14e-97pathogenesis related homeodomain protein A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]