PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00217g02011.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family HB-other
Protein Properties Length: 557aa    MW: 62211 Da    PI: 9.376
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00217g02011.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox18.73e-0668124157
                               TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
                  Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                               +r+R  ++++ ++ +++ F+ +  ++++e +e+++  g+t +qV+ +F  +R++ +k
  Peinf101Scf00217g02011.1  68 KRPRDLLNPKAIKYMQSIFAIKDAINKKETREISALFGVTATQVRDFFTAQRTRVRK 124
                               799***************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500719.42665125IPR001356Homeobox domain
SMARTSM003897.2E-467129IPR001356Homeobox domain
SuperFamilySSF466891.88E-667128IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.6E-568136IPR009057Homeodomain-like
CDDcd000864.76E-468124No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009911Biological Processpositive regulation of flower development
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 557 aa     Download sequence    Send to blast
MEKNQLEVAL FNPSNTTSFM SSFESQKELF QSQIDQLHNI VLHQCNLTGV NPLSQEMAAG  60
ALSIKIGKRP RDLLNPKAIK YMQSIFAIKD AINKKETREI SALFGVTATQ VRDFFTAQRT  120
RVRKLLQLSR EKASTSNTSS EGPCAIPLSS VPSLQTEPVP LESVAPTCTE EGPSCSTQDE  180
ILTGIEESDK HFLDNIFTLM GKEESFSGQV KLMDWILEVQ NPSVLYWYLR VYGGVMILAT  240
WLSQAALEEQ TSVLHVILKV NNDPLVLYYF RIISTFPATN IVVLMVLCHL PLHKAFPVHM  300
SAILQSVNRL RFYRTPDISN RARILLAKWS KMFAKSQAMK KRNGTKSASD MQDELLLQQS  360
IGEVMGSELW NAKVEDLDES HANLSGTSEN LRKLDSPQPV KLLTASSDDS NKMINKGALA  420
SKNRERRKVQ LMEQPSQRTT GRSPPVGRPA PVTQGRPLSA DDIQKAKMRA HFLQSKYGKA  480
NNADNSRVKP EVADGSRVKP EVPNGITSSQ DGSLHGAPKS PDRPEVDEWP KVDREKLENF  540
TLKASNQQES HRKLSLD
Functional Description ? help Back to Top
Source Description
UniProtSeems to play a role in the regulation of flowering time in the autonomous flowering pathway by repressing FLOWERING LOCUS C expression. {ECO:0000269|PubMed:10363371}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009604664.10.0PREDICTED: homeobox protein LUMINIDEPENDENS
SwissprotQ387961e-159LUMI_ARATH; Homeobox protein LUMINIDEPENDENS
TrEMBLA0A1J6K9S10.0A0A1J6K9S1_NICAT; Homeobox protein luminidependens
STRINGXP_009604664.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52402123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02560.21e-162HB-other family protein
Publications ? help Back to Top
  1. Chakrabortee S, et al.
    Luminidependens (LD) is an Arabidopsis protein with prion behavior.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(21): p. 6065-70
    [PMID:27114519]