 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Peinf101Scf00200g01010.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
|
| Family |
NAC |
| Protein Properties |
Length: 198aa MW: 22615.9 Da PI: 10.4186 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Peinf101Scf00200g01010.1 | genome | SGN | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 175.3 | 1.8e-54 | 15 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85
lppGfrFhPtdeelvv+yLkkk+++ +l++ ++i+evd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWka
Peinf101Scf00200g01010.1 15 LPPGFRFHPTDEELVVHYLKKKAASAPLPV-NIIAEVDLYKFDPWELPSKANFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKA 98
79****************************.89***************99999******************************** PP
NAM 86 tgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
tg+dk++++ +++vg+kk Lvfy+g+ pkg kt+Wvmheyrl
Peinf101Scf00200g01010.1 99 TGTDKPIFTCnVTRKVGVKKALVFYRGKPPKGIKTNWVMHEYRL 142
*******99646778***************************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 198 aa
Download sequence Send
to blast |
MENTGLMSSS NHLHLPPGFR FHPTDEELVV HYLKKKAASA PLPVNIIAEV DLYKFDPWEL 60
PSKANFGEQE WYFFSPRDRK YPNGARPNRA ATSGYWKATG TDKPIFTCNV TRKVGVKKAL 120
VFYRGKPPKG IKTNWVMHEY RLVDNNSSLT KKGSLRCSSG NGQGRFNGGY DMFTYNAIFI 180
NKCFRAKSKH ISVERIKF
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 2e-66 | 11 | 144 | 13 | 144 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 2e-66 | 11 | 144 | 13 | 144 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 2e-66 | 11 | 144 | 13 | 144 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 2e-66 | 11 | 144 | 13 | 144 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 3e-66 | 11 | 144 | 16 | 147 | NAC domain-containing protein 19 |
| 3swm_B | 3e-66 | 11 | 144 | 16 | 147 | NAC domain-containing protein 19 |
| 3swm_C | 3e-66 | 11 | 144 | 16 | 147 | NAC domain-containing protein 19 |
| 3swm_D | 3e-66 | 11 | 144 | 16 | 147 | NAC domain-containing protein 19 |
| 3swp_A | 3e-66 | 11 | 144 | 16 | 147 | NAC domain-containing protein 19 |
| 3swp_B | 3e-66 | 11 | 144 | 16 | 147 | NAC domain-containing protein 19 |
| 3swp_C | 3e-66 | 11 | 144 | 16 | 147 | NAC domain-containing protein 19 |
| 3swp_D | 3e-66 | 11 | 144 | 16 | 147 | NAC domain-containing protein 19 |
| 4dul_A | 2e-66 | 11 | 144 | 13 | 144 | NAC domain-containing protein 19 |
| 4dul_B | 2e-66 | 11 | 144 | 13 | 144 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor of the NAC family associated with male fertility. {ECO:0000250}. |
| UniProt | Transcription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:21107887}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AF509875 | 0.0 | AF509875.1 Petunia x hybrida nam-like protein 12 (NH12) mRNA, partial cds. |
