PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00197g03012.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

SBP

Protein Properties

Length: 855aa MW: 95484 Da PI: 6.2434

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00197g03012.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	79.7	4.1e-25	91	147	22	78
T--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 22 kvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 k ++hska +lv +++qrfCqqCsrfh+l+efDe+krsCrrrLa+hn+rrrk+qa Peinf101Scf00197g03012.1 91 KRRRMHSKAGRALVGNVMQRFCQQCSRFHALQEFDEGKRSCRRRLAGHNKRRRKTQA 147 44569*************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51141	22.051	68	145	IPR004333	Transcription factor, SBP-box
Gene3D	G3DSA:4.10.1100.10	6.4E-15	88	132	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.9E-16	94	144	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.83E-22	94	150	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF48403	4.39E-7	628	742	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	3.1E-5	631	743	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	1.52E-6	632	742	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 855 aa Download sequence Send to blast
MEASVENRFY RTDLRGGGLG KRSLEWNLTD WKWDGDLFIA TPLGHQNPSN YQFLPVENRI 60 NHGSSNSSSS CSDEVVVVNH NEQQRRRELE KRRRMHSKAG RALVGNVMQR FCQQCSRFHA 120 LQEFDEGKRS CRRRLAGHNK RRRKTQAESV VNNNSLNDGQ ASANGTNHTE DQDLLSHLLR 180 SLASQGSMNG DKGLSGLLQE SSNLLNNRSI LRNPEIVALL TNGSQAPPRS KEHQFTNSAT 240 EMPQKSLDTN DIRLEDGRTA SSQSPGNLFS NQSNSQAYVP GRESTTGRSK LMDFDLNDVY 300 VDSDDGVEDI ERSPVPECPS WLQQDSHQSS PPQTSGNSDS ASAQSPSSSS GDTQSRTDRI 360 VFKLFGKDPS DFPFVVRAQI LDWLSHSPTE IESYIRPGCV VLTVLLDMSL PYQSNEQSTI 420 LSVRPIAVPV SGRAHVFVKG YNLSKPSSRL LCALEGNYLV PEVNNEVEEH VDGFDKDDKL 480 QSLNFTCSVP AVTGRGFIEV EDQGLSNGFF PFIIAEEDVC SEIRVLESEI ELTSADYVEG 540 QTNNMEARNQ AMDFIHELGW LFHRNNLKAR LEHSGPNAVL YPLKRFKWLM DFSVDHEWCA 600 VVKKLLNILL DGTVGAGEDT FLKFALSDMG LLHRAVRRNS RPLVELLLTY TPEKVADELS 660 SEYQSLVGVH GEFLFRPDSV GPAGLTPLHV AAGIDGSEDV LDALTDDPGK VAVEAWKNTR 720 DSTGFTPEDY ARLRGHYSYI HLVQRKICRK ASSGHIVVDI PTVVSVENSN QKEECAITNF 780 EISRIERRPT RPCGLCHKKL AYGTRSRSLL YKPAMFSMVA MAAVCVCVAL LFRGSPEVLY 840 IFRPFRWEMV DFGTS

Sequence ? help Back to Top

Protein Sequence Length: 855 aa Download sequence Send to blast

MEASVENRFY RTDLRGGGLG KRSLEWNLTD WKWDGDLFIA TPLGHQNPSN YQFLPVENRI  60
NHGSSNSSSS CSDEVVVVNH NEQQRRRELE KRRRMHSKAG RALVGNVMQR FCQQCSRFHA  120
LQEFDEGKRS CRRRLAGHNK RRRKTQAESV VNNNSLNDGQ ASANGTNHTE DQDLLSHLLR  180
SLASQGSMNG DKGLSGLLQE SSNLLNNRSI LRNPEIVALL TNGSQAPPRS KEHQFTNSAT  240
EMPQKSLDTN DIRLEDGRTA SSQSPGNLFS NQSNSQAYVP GRESTTGRSK LMDFDLNDVY  300
VDSDDGVEDI ERSPVPECPS WLQQDSHQSS PPQTSGNSDS ASAQSPSSSS GDTQSRTDRI  360
VFKLFGKDPS DFPFVVRAQI LDWLSHSPTE IESYIRPGCV VLTVLLDMSL PYQSNEQSTI  420
LSVRPIAVPV SGRAHVFVKG YNLSKPSSRL LCALEGNYLV PEVNNEVEEH VDGFDKDDKL  480
QSLNFTCSVP AVTGRGFIEV EDQGLSNGFF PFIIAEEDVC SEIRVLESEI ELTSADYVEG  540
QTNNMEARNQ AMDFIHELGW LFHRNNLKAR LEHSGPNAVL YPLKRFKWLM DFSVDHEWCA  600
VVKKLLNILL DGTVGAGEDT FLKFALSDMG LLHRAVRRNS RPLVELLLTY TPEKVADELS  660
SEYQSLVGVH GEFLFRPDSV GPAGLTPLHV AAGIDGSEDV LDALTDDPGK VAVEAWKNTR  720
DSTGFTPEDY ARLRGHYSYI HLVQRKICRK ASSGHIVVDI PTVVSVENSN QKEECAITNF  780
EISRIERRPT RPCGLCHKKL AYGTRSRSLL YKPAMFSMVA MAAVCVCVAL LFRGSPEVLY  840
IFRPFRWEMV DFGTS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	5e-17	95	144	35	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence. {ECO:0000269\|PubMed:10524240, ECO:0000269\|PubMed:16095614}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975440	0.0	HG975440.1 Solanum pennellii chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016474508.1	0.0	PREDICTED: squamosa promoter-binding-like protein 1 isoform X1
Swissprot	Q9SMX9	0.0	SPL1_ARATH; Squamosa promoter-binding-like protein 1
TrEMBL	A0A1S4AD93	0.0	A0A1S4AD93_TOBAC; squamosa promoter-binding-like protein 1 isoform X1
STRING	XP_009592086.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1871	24	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	0.0	squamosa promoter binding protein-like 1

Publications ? help Back to Top
Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Chao LM, et al. Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage. Mol Plant, 2017. 10(5): p. 735-748 [PMID:28400323]