PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00192g09018.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family GRAS
Protein Properties Length: 763aa    MW: 83504.9 Da    PI: 6.3925
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00192g09018.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS336.64.4e-1034127042306
                      GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 
                                +lLl+cAeavs+++le+a+++L ++sel++p g++ qR+aayf eA++arl++s+ ++y+alp+++ +   +++ ++a+++f+ 
  Peinf101Scf00192g09018.1 412 LTLLLQCAEAVSADNLEEANRMLLEVSELSTPFGTSAQRVAAYFSEAMSARLLNSCLGIYAALPVTSIPLPYTQKMASAFQVFNG 496
                               579***************************************************************999999************* PP

                      GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAee 171
                               +sP++kfsh+taNqaI ea+e+e+rvHiiD+di+qGlQWp L++ LasRp+gpp +R+Tg+g+    s ++le+tg+rL++fAe+
  Peinf101Scf00192g09018.1 497 ISPFIKFSHFTANQAIQEAFEREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPFVRLTGLGN----SMDALEATGKRLSDFAER 577
                               ***************************************************************....****************** PP

                      GRAS 172 lgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFler 256
                               lg+pfef + va+++ +l++e+L+v+++Ea+aV++    h+l+d ++s ++    +L l+++l Pkvv+vveq+++h ++sFl r
  Peinf101Scf00192g09018.1 578 LGLPFEFLP-VADKVGNLDPEKLNVSKREAVAVHWLQ--HSLYDVTGSDAN----TLGLLQRLAPKVVTVVEQDLSH-AGSFLGR 654
                               *********.7*************************9..999999999999....**********************.899**** PP

                      GRAS 257 flealeyysalfdsleaklpreseerikvErellgreivnvvacegaerr 306
                               f+ea++yysalfdsl a +++eseer++vE++ll++ei+nv+a  g +r 
  Peinf101Scf00192g09018.1 655 FVEAIHYYSALFDSLGACYGEESEERHVVEQQLLSKEIRNVLAVGGPSRS 704
                               ********************************************999986 PP
2GRAS31.13.1e-10704744334374
                      GRAS 334 akqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                +qa lll +++s+gy++ e++g+l lgWkd  L+++SaWr
  Peinf101Scf00192g09018.1 704 SAQATLLLGMFPSHGYTLVEDNGTLKLGWKDLCLFTASAWR 744
                               579*************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098552.922385749IPR005202Transcription factor GRAS
PfamPF035141.5E-100412704IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008356Biological Processasymmetric cell division
GO:0009630Biological Processgravitropism
GO:0009956Biological Processradial pattern formation
GO:0048366Biological Processleaf development
GO:0051457Biological Processmaintenance of protein location in nucleus
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 763 aa     Download sequence    Send to blast
MAKAFPLNGD KCINTGANVG LSSNSSGAKM VRKRAASDME IQIGEENRYL RRPNTMGVSH  60
THQLGDLRVC NNSSNLGGHN MMSNNSNYST MQMLPSSTNL CAMTSMGFSN STPNLTYTDA  120
ITSHLIQPQG SQIQNTNINN NNNNQSASVC VFSGLPLFPP ERNRQSGGLL QQQASLTSTV  180
GARIESMDDN ATATAWIDGI IKDLINSSAQ VSVPQLIQNV REIIHPCNPY LASLLEYRLR  240
SLTSNNNNND AMDCWRRKEA VPPLASLHQG QHNINLLQQN IVSQLPDSST QFLNWPDSSP  300
VAPSLNQQQL GNNNLTATDL SFVTPPVLPP QVQHPQQQQE SPHSQQVVDL EQQQKQQQSS  360
STSLSPSTVA DSTAAKAKTP TAVAAAVPGN TYREKKEELR QQKRDEEGLH LLTLLLQCAE  420
AVSADNLEEA NRMLLEVSEL STPFGTSAQR VAAYFSEAMS ARLLNSCLGI YAALPVTSIP  480
LPYTQKMASA FQVFNGISPF IKFSHFTANQ AIQEAFERED RVHIIDLDIM QGLQWPGLFH  540
ILASRPGGPP FVRLTGLGNS MDALEATGKR LSDFAERLGL PFEFLPVADK VGNLDPEKLN  600
VSKREAVAVH WLQHSLYDVT GSDANTLGLL QRLAPKVVTV VEQDLSHAGS FLGRFVEAIH  660
YYSALFDSLG ACYGEESEER HVVEQQLLSK EIRNVLAVGG PSRSAQATLL LGMFPSHGYT  720
LVEDNGTLKL GWKDLCLFTA SAWRPNSLHI SPASRHFSRP NME
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A0.03957473382Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor involved in asymmetric cell division (By similarity). Required for differentiation of endodermis and graviresponses. {ECO:0000250, ECO:0000269|PubMed:16339910}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015089256.10.0protein SCARECROW
RefseqXP_015089257.10.0protein SCARECROW
SwissprotQ2Z2E90.0SCR_IPONI; Protein SCARECROW
TrEMBLA0A3Q7IJC30.0A0A3Q7IJC3_SOLLC; Uncharacterized protein
STRINGSolyc10g074680.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA82582430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.10.0GRAS family protein