PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00183g03012.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family FAR1
Protein Properties Length: 568aa    MW: 65226.9 Da    PI: 8.5009
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00183g03012.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR167.53.5e-2153128190
                      FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 
                               +fYn YA++vGF++r+ + ++s+ +g++++r+fvCskeg++++              +rtgC a ++v+k ++gkw+++++++eH
  Peinf101Scf00183g03012.1  53 EFYNLYATKVGFRIRIGQLYRSRVDGSVVSRRFVCSKEGFQTT--------------SRTGCPAFIRVQKVDSGKWVLANIKKEH 123
                               6***************************************976..............589************************* PP

                      FAR1  86 nHela 90 
                               nHel 
  Peinf101Scf00183g03012.1 124 NHELE 128
                               ***96 PP

2FAR1675e-21202277190
                      FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 
                               +fY++YA ++GF+vr+ +  +sk++g+it+r+fvCskeg++++              +r+gC a ++++++++g+w v+++++eH
  Peinf101Scf00183g03012.1 202 EFYHTYAANTGFRVRIGQLFRSKNDGSITSRRFVCSKEGHQHP--------------SRVGCGAFMRIQRQETGRWLVDRCQNEH 272
                               6**************************************9998..............4899************************ PP

                      FAR1  86 nHela 90 
                               nHel 
  Peinf101Scf00183g03012.1 273 NHELD 277
                               ***97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.9E-1753128IPR004330FAR1 DNA binding domain
PfamPF031019.7E-17202278IPR004330FAR1 DNA binding domain
PROSITE profilePS5096610.311458494IPR007527Zinc finger, SWIM-type
PfamPF044341.7E-6467491IPR007527Zinc finger, SWIM-type
SMARTSM005751.4E-6469496IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 568 aa     Download sequence    Send to blast
MSREELGNTM TVRANPAGLA IVKTNDLRDD DEEESRLEPN VGLEFDSAED AQEFYNLYAT  60
KVGFRIRIGQ LYRSRVDGSV VSRRFVCSKE GFQTTSRTGC PAFIRVQKVD SGKWVLANIK  120
KEHNHELEHP GEICPSRIQR KIIPSPKSSV VVSTRTGLRS IDEDSPSGII DLKRLKREKV  180
DGEPTGEPYK GLEFISAGEA YEFYHTYAAN TGFRVRIGQL FRSKNDGSIT SRRFVCSKEG  240
HQHPSRVGCG AFMRIQRQET GRWLVDRCQN EHNHELDPAS DASGGVSVAL KGFKEEASSS  300
QTANEFEAAW NVLINKYNLK ENTWLKEMYR MRKSWVPLHL RGTFFAGMPM DGRLKSYFGT  360
ILTSQTPLSE FIIRYEKALE QRREEERKED FNSLNLQAVL HSKDPMEDQS RKLYTITLFK  420
VFQKELLECY NYVGIKINVE GAISRYLVQK CGTGDERNTV AFNASNLNVS CSCKMFEFEG  480
VLCRHSLKVF QIMNIRELPS RYILHRWTKD AKYGILRDVD SGDYNALMLW SLREEARNYI  540
EAGTASLERY KLAFEIMQEG RRNLCWQN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755220.0HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009791235.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 7-like
RefseqXP_009791236.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 7-like
RefseqXP_009791237.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 7-like
RefseqXP_016487162.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 7-like
RefseqXP_016487163.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 7-like
TrEMBLA0A2H5N7E00.0A0A2H5N7E0_CITUN; Uncharacterized protein (Fragment)
STRINGXP_009791235.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA73472130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06250.11e-132FAR1-related sequence 7