PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00183g03012.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | FAR1 | ||||||||
Protein Properties | Length: 568aa MW: 65226.9 Da PI: 8.5009 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 67.5 | 3.5e-21 | 53 | 128 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 +fYn YA++vGF++r+ + ++s+ +g++++r+fvCskeg++++ +rtgC a ++v+k ++gkw+++++++eH Peinf101Scf00183g03012.1 53 EFYNLYATKVGFRIRIGQLYRSRVDGSVVSRRFVCSKEGFQTT--------------SRTGCPAFIRVQKVDSGKWVLANIKKEH 123 6***************************************976..............589************************* PP FAR1 86 nHela 90 nHel Peinf101Scf00183g03012.1 124 NHELE 128 ***96 PP | |||||||
2 | FAR1 | 67 | 5e-21 | 202 | 277 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 +fY++YA ++GF+vr+ + +sk++g+it+r+fvCskeg++++ +r+gC a ++++++++g+w v+++++eH Peinf101Scf00183g03012.1 202 EFYHTYAANTGFRVRIGQLFRSKNDGSITSRRFVCSKEGHQHP--------------SRVGCGAFMRIQRQETGRWLVDRCQNEH 272 6**************************************9998..............4899************************ PP FAR1 86 nHela 90 nHel Peinf101Scf00183g03012.1 273 NHELD 277 ***97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.9E-17 | 53 | 128 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF03101 | 9.7E-17 | 202 | 278 | IPR004330 | FAR1 DNA binding domain |
PROSITE profile | PS50966 | 10.311 | 458 | 494 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 1.7E-6 | 467 | 491 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 1.4E-6 | 469 | 496 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 568 aa Download sequence Send to blast |
MSREELGNTM TVRANPAGLA IVKTNDLRDD DEEESRLEPN VGLEFDSAED AQEFYNLYAT 60 KVGFRIRIGQ LYRSRVDGSV VSRRFVCSKE GFQTTSRTGC PAFIRVQKVD SGKWVLANIK 120 KEHNHELEHP GEICPSRIQR KIIPSPKSSV VVSTRTGLRS IDEDSPSGII DLKRLKREKV 180 DGEPTGEPYK GLEFISAGEA YEFYHTYAAN TGFRVRIGQL FRSKNDGSIT SRRFVCSKEG 240 HQHPSRVGCG AFMRIQRQET GRWLVDRCQN EHNHELDPAS DASGGVSVAL KGFKEEASSS 300 QTANEFEAAW NVLINKYNLK ENTWLKEMYR MRKSWVPLHL RGTFFAGMPM DGRLKSYFGT 360 ILTSQTPLSE FIIRYEKALE QRREEERKED FNSLNLQAVL HSKDPMEDQS RKLYTITLFK 420 VFQKELLECY NYVGIKINVE GAISRYLVQK CGTGDERNTV AFNASNLNVS CSCKMFEFEG 480 VLCRHSLKVF QIMNIRELPS RYILHRWTKD AKYGILRDVD SGDYNALMLW SLREEARNYI 540 EAGTASLERY KLAFEIMQEG RRNLCWQN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975522 | 0.0 | HG975522.1 Solanum lycopersicum chromosome ch10, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009791235.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 7-like | ||||
Refseq | XP_009791236.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 7-like | ||||
Refseq | XP_009791237.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 7-like | ||||
Refseq | XP_016487162.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 7-like | ||||
Refseq | XP_016487163.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 7-like | ||||
TrEMBL | A0A2H5N7E0 | 0.0 | A0A2H5N7E0_CITUN; Uncharacterized protein (Fragment) | ||||
STRING | XP_009791235.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7347 | 21 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06250.1 | 1e-132 | FAR1-related sequence 7 |