PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

ERF

Protein Properties

Length: 273aa MW: 30821.8 Da PI: 6.603

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00170g01002.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	57.1	4.3e-18	101	151	2	56
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr + +g+Wv+eIr+p++ + r++lg++ tae+Aa+a++ a ++++g+ Peinf101Scf00170g01002.1 101 TYRGVRKRN-WGKWVCEIREPRK---KSRIWLGTYPTAEMAARAHDVASLAIKGH 151 69**887.******843...6*******************9999886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	1.7E-31	101	158	IPR001471	AP2/ERF domain
Pfam	PF00847	2.2E-13	101	151	IPR001471	AP2/ERF domain
SMART	SM00380	8.6E-33	101	164	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	23.288	101	158	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.11E-21	101	159	IPR016177	DNA-binding domain
CDD	cd00018	1.08E-30	102	160	No hit	No description
PRINTS	PR00367	1.4E-10	102	113	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.4E-10	124	140	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MKDQLEQINL GTLAQFQHDF SNFSSTTSTS FSSSNCRNSP STTTSSSSSS FHEINTKTQV 60 EYKSKKSSKK IQEFAHNGND HIVENENKRR SKNEGHDKHP TYRGVRKRNW GKWVCEIREP 120 RKKSRIWLGT YPTAEMAARA HDVASLAIKG HSAYLNFPYL ADQLPRPASN SPKDIQVAAA 180 KAAATTFPEE SCSGKEIESS LTELHSSCSS TNLSSENNQE FIDSPSTEND DTFFNLPDLS 240 INNMDQKDRI STWQQVGADV GFWFEEPFLW ESY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	2e-17	99	159	12	73	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009628141.1	1e-110	PREDICTED: ethylene-responsive transcription factor ERF038-like
Refseq	XP_016490268.1	1e-110	PREDICTED: ethylene-responsive transcription factor ERF038-like
Swissprot	Q8LBQ7	2e-56	ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBL	A0A1S4BN00	1e-108	A0A1S4BN00_TOBAC; ethylene-responsive transcription factor ERF038-like
STRING	XP_009628141.1	1e-109	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA212	24	225

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44940.1	2e-52	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]