PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00144g03023.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | TALE | ||||||||
Protein Properties | Length: 508aa MW: 57125.3 Da PI: 7.2981 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.9 | 2e-09 | 314 | 346 | 22 | 54 |
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 ++yp+ +++ LAk++gL+ +qV++WF N R + Peinf101Scf00144g03023.1 314 HPYPTDTDKVMLAKQTGLSRNQVSNWFINARVR 346 89*****************************88 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 8.2E-40 | 120 | 246 | IPR006563 | POX domain |
Pfam | PF07526 | 2.4E-28 | 180 | 245 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 11.953 | 287 | 350 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.51E-12 | 290 | 351 | No hit | No description |
SMART | SM00389 | 8.6E-10 | 290 | 354 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.76E-17 | 292 | 356 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.6E-27 | 293 | 354 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.1E-18 | 307 | 346 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 508 aa Download sequence Send to blast |
MAESFEPYHV PQQSRRDKLR GLALSDNLVS LYHDPSINIP SSDHFPTYYM DPQDINTNPF 60 LYTPQNLKYL DDTCNTNTNN AHQGLSLSLS SIHHTTNGST SNNYLSKSST TCHVPLGPFT 120 GYSLILKRSK FLKPAQMLLE ELCDVGSKGI YAEKLADDDL TLLLDSPLGV EPQIIYGDEH 180 VMRKKSRLIS MLDEVYQKYK QYYQQLQMVV ASFESVAGLG NAAPFANIAL KAMSKNFKCL 240 KDAITDQLQF TSKSHSPVNC ERIEVTGKEL YCQRRAIHSA GFADRTQPVW RPQRGLPERA 300 VTVLRAWLFD HFLHPYPTDT DKVMLAKQTG LSRNQVSNWF INARVRLWKP MVEEIHMLET 360 REGHNKTSQI DQGQNSNNNP IEHFPTSSNS HPCDQTPSTS APRIQDIPSK RTRNDLANVP 420 IGSNMMDSIN LSYGNLSTGT GGVSLTLGLH QDTGNIGLSE PFPINAARRF GIDSNSDHRF 480 MVSSFEEQNG QYGRNMISGQ FLQDFARL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 2e-15 | 296 | 354 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 2e-15 | 296 | 354 | 5 | 63 | Homeobox protein Meis2 |
4xrm_A | 3e-15 | 296 | 354 | 5 | 63 | Homeobox protein Meis2 |
4xrm_B | 3e-15 | 296 | 354 | 5 | 63 | Homeobox protein Meis2 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that is involved in the preservation of the spiral phyllotactic arrangement leading to a regular pattern of organ initiation. Required for maintenance of stem cell fate in the shoot apical meristem, and is essential for specifying floral primordia and establishing early internode patterning events during inflorescence development. Acts as transcription repressor of AG expression in floral and inflorescence meristems. Is also responsive of the nuclear import of SHOOT MERISTEMLESS (STM). In the fruit, plays a central role in patterning by negatively regulating SHP expression in order to prevent replum cells from adopting a valve margin cell fate. {ECO:0000269|PubMed:12874117, ECO:0000269|PubMed:12897247, ECO:0000269|PubMed:13678595, ECO:0000269|PubMed:15019989, ECO:0000269|PubMed:15120075, ECO:0000269|PubMed:15155890, ECO:0000269|PubMed:16741748}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009606015.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 9 | ||||
Swissprot | Q9LZM8 | 1e-109 | BLH9_ARATH; BEL1-like homeodomain protein 9 | ||||
TrEMBL | A0A2P1BUW9 | 0.0 | A0A2P1BUW9_9SOLA; Replumless2 (Fragment) | ||||
STRING | XP_009606015.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3520 | 22 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G02030.1 | 3e-94 | TALE family protein |