![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Peinf101Scf00140g36005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 712aa MW: 77898.5 Da PI: 6.1824 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.6 | 4.9e-19 | 59 | 114 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t+ q++e+e++F+++++p+ ++r+eL k+lgL+ qVk+WFqN+R+++k Peinf101Scf00140g36005.1 59 KKRYHRHTQLQITEMEAFFKECPHPDDKQRKELGKRLGLEPLQVKFWFQNKRTQMK 114 688999***********************************************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.0E-22 | 40 | 114 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.21E-18 | 42 | 116 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.115 | 56 | 116 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.1E-17 | 57 | 120 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.2E-16 | 59 | 114 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.08E-17 | 59 | 117 | No hit | No description |
SuperFamily | SSF55961 | 1.65E-37 | 239 | 471 | No hit | No description |
PROSITE profile | PS50848 | 46.558 | 239 | 472 | IPR002913 | START domain |
CDD | cd08875 | 3.36E-129 | 243 | 468 | No hit | No description |
SMART | SM00234 | 3.6E-71 | 248 | 469 | IPR002913 | START domain |
Pfam | PF01852 | 2.1E-58 | 249 | 469 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 5.6E-6 | 346 | 469 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 1.1E-16 | 489 | 708 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009845 | Biological Process | seed germination | ||||
GO:0009913 | Biological Process | epidermal cell differentiation | ||||
GO:0048497 | Biological Process | maintenance of floral organ identity | ||||
GO:0048825 | Biological Process | cotyledon development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 712 aa Download sequence Send to blast |
MFQSNMFESH HHLLDMSHKS PENELDLIRD DEFETKSGTD IMENPSGDDQ DPNQRPNKKK 60 RYHRHTQLQI TEMEAFFKEC PHPDDKQRKE LGKRLGLEPL QVKFWFQNKR TQMKAQHERS 120 ENSQLRADNE KLRAENIRYK EALSNATCPN CGGPAAIGEM SFDEQHLRIE NARLREEIDR 180 ISGIAAKYVG KPMLTYPNLP AVGSTRSLDL GVGSFGPQSG LVGEMYSAGD LLRSVSGPTD 240 ADKPMIIELA VAAMEELIRM AQTGEPLWIT SPENPTETIL SEDEYVRTFP RGIGPKPLGL 300 KSEASRESAV VIMNHINLVE ILMDVNQWTN VFAGLVSRAL TLEVLSTGVA GNYNGALQVM 360 TAEFQVPSPL VPTRENYFVR YCKHHADGTW AVVDVSLDNL RPTSVSRCRR RPSGCLIQEL 420 PNGYSKVTWI EHVEVDDRAV HNIYRPLVNS GIAFGAKRWV ATLDRQCERL ASAMANNIPT 480 GDVGVITSPE GRKSMLKLAE RMVMSFCAGV GASTAHTWTT LSGSGADDVR VMTRKSIDDP 540 GRPPGIVLSA ATSFWLPVPP KRWDILSNGG LVQEMAHIAN GRDPGNCVSL LRVNSGNSSQ 600 SNMLILQESS TDSTGSYVIY APVDIVAMNV VLSGGDPDYV ALLPSGFAIL PDGSTSHGGG 660 NIPEVGIGGS LLTVAFQILV DSVPTAKLSL GSVATVNSLI KCTVERIKTA VA |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to ATML1. {ECO:0000269|PubMed:12505995}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_019249652.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein MERISTEM L1-like | ||||
Swissprot | Q93V99 | 0.0 | PDF2_ARATH; Homeobox-leucine zipper protein PROTODERMAL FACTOR 2 | ||||
TrEMBL | A0A1J6IZ03 | 0.0 | A0A1J6IZ03_NICAT; Homeobox-leucine zipper protein meristem l1 | ||||
STRING | XP_009597904.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA932 | 24 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G04890.1 | 0.0 | protodermal factor 2 |
Publications ? help Back to Top | |||
---|---|---|---|
|