PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00113g06008.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family C3H
Protein Properties Length: 370aa    MW: 41775.6 Da    PI: 7.8461
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00113g06008.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.42.1e-074464526
                              --SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                               C ++++ G C yG+rC++ H+
  Peinf101Scf00113g06008.1 44 VCTYYQK-GLCAYGSRCRYEHV 64
                              5******.***********997 PP
2zf-CCCH25.91.7e-08152173426
                               ---SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                               ++C+ fa+ G C++G++C+++Hg
  Peinf101Scf00113g06008.1 152 SICS-FAAAGNCPRGEKCPYIHG 173
                               6788.*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.1881138IPR000571Zinc finger, CCCH-type
SMARTSM003560.0381237IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-61436IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.1453966IPR000571Zinc finger, CCCH-type
SMARTSM003560.00124065IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-54263IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-44463IPR000571Zinc finger, CCCH-type
PfamPF006427.0E-54464IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.164148175IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.02E-5149173IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-4149174IPR000571Zinc finger, CCCH-type
PfamPF006429.4E-6152173IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4153173IPR000571Zinc finger, CCCH-type
SuperFamilySSF578507.36E-13207281No hitNo description
Gene3DG3DSA:3.30.40.105.2E-10210276IPR013083Zinc finger, RING/FYVE/PHD-type
PfamPF136394.7E-7216275IPR001841Zinc finger, RING-type
CDDcd001625.95E-4216276No hitNo description
PROSITE profilePS5008912.593217275IPR001841Zinc finger, RING-type
SMARTSM001842.4E-7217274IPR001841Zinc finger, RING-type
PROSITE patternPS005180241250IPR017907Zinc finger, RING-type, conserved site
PROSITE profilePS5010313.206304333IPR000571Zinc finger, CCCH-type
SMARTSM003560.11304332IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MAICTYRHAY IFSRVQCKFF VHGACLKGEH CEFSHDWKDP PNNVCTYYQK GLCAYGSRCR  60
YEHVKVSQKP SLPSPSAPAQ HLLSAPRPTT LSPEILADGA GFLSSISAEC LASGRPLYSP  120
NQPAWSENSE HHDVEGIDNL VELKSSNPAD QSICSFAAAG NCPRGEKCPY IHGDLCPICT  180
KHCLHPFRPQ EREEHMKTCE KRQKHLELLK HSQEIECSVC LERVLSKTTV AERKFGILSE  240
CDHPFCVSCI RNWRGASPST RIDVNSTFRS CPICRKLSYF VIPSVIWYST KEEKQDILDS  300
YKAKLRSVDC KHFDFGNGTC PFGTSCFYKH QFRDGRLEEV VLRHLGSEDG STVIAKDIRL  360
SDFLSNLRIS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009779785.10.0PREDICTED: E3 ubiquitin-protein ligase makorin-like isoform X1
SwissprotE0X9N41e-164C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69
TrEMBLA0A1U7WZZ10.0A0A1U7WZZ1_NICSY; E3 ubiquitin-protein ligase makorin-like isoform X1
STRINGXP_009779785.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33862149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-153C3H family protein
Publications ? help Back to Top
  1. Wang CT,Ho CH,Hseu MJ,Chen CM
    The subtelomeric region of the Arabidopsis thaliana chromosome IIIR contains potential genes and duplicated fragments from other chromosomes.
    Plant Mol. Biol., 2010. 74(1-2): p. 155-66
    [PMID:20652368]