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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00096g00020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | MYB | ||||||||
Protein Properties | Length: 465aa MW: 52980.4 Da PI: 6.605 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.3 | 2.7e-16 | 122 | 168 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT eEd +l+++vkq+G + W+ Ia++m R +kqc++rw+++l Peinf101Scf00096g00020.1 122 KGQWTDEEDRKLLRLVKQFGVRKWAQIAEKME-ARGGKQCRERWHNHL 168 799*****************************.*************97 PP | |||||||
2 | Myb_DNA-binding | 57 | 4.5e-18 | 174 | 216 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +++W++eE++ lv+a+kq G++ W+ Ia++++ gRt++ +k++w+ Peinf101Scf00096g00020.1 174 KDSWSEEEELMLVEAHKQIGNR-WAEIAKRIP-GRTENAIKNHWN 216 679*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 27.038 | 117 | 172 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.03E-29 | 119 | 215 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-15 | 121 | 170 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.7E-26 | 123 | 174 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.51E-15 | 125 | 168 | No hit | No description |
Pfam | PF13921 | 3.7E-19 | 125 | 184 | No hit | No description |
SMART | SM00717 | 6.5E-17 | 173 | 221 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 20.005 | 173 | 223 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.7E-21 | 175 | 221 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.42E-13 | 176 | 219 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 465 aa Download sequence Send to blast |
MENSRGASAF HPYQNLPKNN LHVLQPNLPL TAIDRFLLGH ETYFSPLSGA NASSSHANEV 60 SWPTLEPSFM ELGYFLHEQS AINYMDDHQE NIMIVEAESS QTNKKESVKK AKEGYSTTNL 120 IKGQWTDEED RKLLRLVKQF GVRKWAQIAE KMEARGGKQC RERWHNHLRP DIKKDSWSEE 180 EELMLVEAHK QIGNRWAEIA KRIPGRTENA IKNHWNATKR RQNSRRNKNR KNQQVGQNEG 240 KHRSNVLQDY IRSKYFNDDS SSTATSHQEC LHYHTNTITP TNSTTTNATP SYSNDDSTSL 300 LTHQTYDEEL QFMQNLFGKN SILDNNGAKA IDHSMEAKVT QNLFDNNNSS SSFSAFSSLD 360 FSSDPLASET NITTKRVIHD AENYMNDYYK ESALHCPDLY LSYLLDASTY SSMPFPEASG 420 YGSMNMGMLM NQGGCSSGNN KEVDFMDMAS SNSQFSQGNF TKPFF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 9e-44 | 119 | 222 | 4 | 107 | B-MYB |
1mse_C | 9e-44 | 120 | 222 | 2 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 9e-44 | 120 | 222 | 2 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 7e-51 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016435339.1 | 1e-177 | PREDICTED: transcriptional activator Myb-like | ||||
TrEMBL | A0A1S3X5Z3 | 1e-175 | A0A1S3X5Z3_TOBAC; transcriptional activator Myb-like | ||||
STRING | XP_009626870.1 | 1e-176 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4825 | 19 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58850.1 | 3e-60 | myb domain protein 119 |