PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00095g05006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | FAR1 | ||||||||
Protein Properties | Length: 361aa MW: 40810.1 Da PI: 9.747 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 29.7 | 2.1e-09 | 62 | 114 | 2 | 55 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtr 55 Yn+YA e GF vrk ++++ rn+ it+ f Cs+egk+++ + +e++r+++ Peinf101Scf00095g05006.1 62 AYNSYAVEKGFGVRKGVKTHN-RNKVITRCLFLCSCEGKSSKLSPYEERKRKSH 114 5***************99998.8888**************99988866666654 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.3E-6 | 62 | 112 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 361 aa Download sequence Send to blast |
IVYASSLQME DLNVENGLSN QEDYTVKDQQ LFTKAHNVCN INKNFVFEIG MKFGSEEESY 60 NAYNSYAVEK GFGVRKGVKT HNRNKVITRC LFLCSCEGKS SKLSPYEERK RKSHPMIEDN 120 LRHFIQSGRK LTDATKNIIG SMIDAGIRTK KAVRYLQNEA SGIENEGFIE QDAHNFIQSY 180 KRNMIKSGDA QILAFAVMTL AANDVDSEKI ARKYLYQANV EITRFQSKLY AEGRDKGVHK 240 FNSIVDPCQD SKDIILDPIK KKGKGKGYKR LKPNIEKGRK KASQKTLKDK VGHPNEQQSF 300 STMAATVNAQ SSSMSQINSS FEFYGESSNT FTQLLTQDST LWTTGYNQNR GLNNMQSNIG 360 I |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 109 | 113 | KRKSH |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016467903.1 | 3e-78 | PREDICTED: putative protein FAR1-RELATED SEQUENCE 10 | ||||
STRING | XP_009628526.1 | 6e-77 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1726 | 9 | 31 |