PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00094g12001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | ERF | ||||||||
Protein Properties | Length: 226aa MW: 25247 Da PI: 9.7907 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.3 | 7.1e-17 | 96 | 146 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +y GVr++ +g ++AeIrdp kr+r +lg+++t+e+Aa a+++a+ k++g Peinf101Scf00094g12001.1 96 RYIGVRRRQ-WGTFAAEIRDP---ErKRARLWLGTYDTPEDAALAYDQAAFKFRG 146 699***887.**********7...3347************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.22E-21 | 96 | 155 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.077 | 96 | 154 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.23E-28 | 96 | 156 | No hit | No description |
Pfam | PF00847 | 7.0E-12 | 96 | 146 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.9E-30 | 96 | 155 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.8E-34 | 96 | 160 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-10 | 97 | 108 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-10 | 136 | 156 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MNNPVADETF SFPELDLLES IKQHLLNDSD FSDIFSHVIS SSNNAILPYS PSPSIGSSCP 60 SLESNEKSEF DDQEKITTKS PAVVERAANA PHDWRRYIGV RRRQWGTFAA EIRDPERKRA 120 RLWLGTYDTP EDAALAYDQA AFKFRGSKAR LNFPHLIGSS NTPNPARLTS RRPVRSPEPA 180 SSSSSSSSNS TTSSQNAGTR KRRIDLINSI ARAKRFCNSW NVQMLV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-22 | 95 | 159 | 4 | 68 | ATERF1 |
3gcc_A | 2e-22 | 95 | 159 | 4 | 68 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as a transcriptional activator and may be involved in disease resistance pathways. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade, and to be influenced by methyl-jasmonate. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:10792818, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by ethephon (ethylene-releasing compound) in buds and to a lower extent in leaves. Strongly induced by cycloheximide and mechanical stimuli. Wounding leads to a both local and systemic expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by both protein kinases and protein phosphatases. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:12090623, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016544939.1 | 2e-79 | PREDICTED: ethylene-responsive transcription factor 2-like | ||||
Swissprot | Q40479 | 1e-34 | ERF2_TOBAC; Ethylene-responsive transcription factor 2 | ||||
TrEMBL | A0A1U8EM33 | 4e-78 | A0A1U8EM33_CAPAN; Ethylene-responsive transcription factor 2 | ||||
TrEMBL | A0A2G3AMD8 | 4e-78 | A0A2G3AMD8_CAPAN; ethylene-responsive transcription factor 2-like | ||||
STRING | PGSC0003DMT400097101 | 2e-77 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44840.1 | 8e-36 | ethylene-responsive element binding factor 13 |
Publications ? help Back to Top | |||
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