PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

ERF

Protein Properties

Length: 271aa MW: 30146 Da PI: 6.7948

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00094g02005.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	57.9	2.5e-18	93	143	2	56
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr + +g+Wv+eIr p++ + r++lg++ tae+Aa+a++ a+++++g+ Peinf101Scf00094g02005.1 93 TYRGVRKRN-WGKWVSEIRQPRK---KSRIWLGTYPTAEMAARAHDVAALAIKGH 143 69**887.******843...6*********************99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	23.578	93	150	IPR001471	AP2/ERF domain
Pfam	PF00847	3.0E-13	93	143	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	6.3E-32	93	151	IPR001471	AP2/ERF domain
SMART	SM00380	7.2E-36	93	156	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	7.85E-22	93	151	IPR016177	DNA-binding domain
PRINTS	PR00367	1.4E-10	94	105	IPR001471	AP2/ERF domain
CDD	cd00018	3.28E-32	94	152	No hit	No description
PRINTS	PR00367	1.4E-10	116	132	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence Send to blast
MEDHHLHHEF AISSSSTTCS SFASSSNCLS SPSTTTSSSS SSSFHESNAK TPSKDYNCKS 60 KKSSKKVQEF SNNGNEENKK RRKSEGGDEK HPTYRGVRKR NWGKWVSEIR QPRKKSRIWL 120 GTYPTAEMAA RAHDVAALAI KGHSAYLNFP HLADQLPRPA SSSPKDIQVA AAKAATATVL 180 EENFSGGEVE SSQIELHSSH SSTNLVSENI QESLNSPSLD HDDTFFDLPD LSIDRVDQND 240 RYQYPTSTWQ ALVGADNGIF RLEEPFLWEC Y

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	3e-18	91	151	12	73	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	78	82	KKRRK

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00312	DAP	Transfer from AT2G44940	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009771308.1	1e-131	PREDICTED: ethylene-responsive transcription factor ERF039-like
Swissprot	Q8LBQ7	2e-61	ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBL	A0A1U7VY64	1e-129	A0A1U7VY64_NICSY; ethylene-responsive transcription factor ERF039-like
STRING	XP_009771308.1	1e-130	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA212	24	225

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44940.1	6e-55	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]