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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00088g00014.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | MYB_related | ||||||||
Protein Properties | Length: 464aa MW: 53954.2 Da PI: 8.345 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 21.8 | 4.5e-07 | 364 | 411 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 WT+e ++++ d vk + Wk I + ++ ++++++++s+++++ Peinf101Scf00088g00014.1 364 YWTKEQEKKFQDTVKSNPLSvnkgFWKEIFKLFP-NKSRESLVSYYFNV 411 6****************999999***********.***********996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51156 | 9.885 | 262 | 356 | IPR000949 | ELM2 domain |
SMART | SM01189 | 2.7E-7 | 264 | 316 | IPR000949 | ELM2 domain |
CDD | cd00167 | 0.00176 | 365 | 412 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 464 aa Download sequence Send to blast |
MEVEFDLREI LMKISDEKNK EEEYANVDSR RVEFDAATGQ RMCNGIKADE FVFMNKCYKK 60 FDGKISLDHD KYNVKDVDET SGVGYDEEHL KSVNRSRSVE CGMDEVMKSS VVKENEISRK 120 RKRESSADLL RWVTDVAKDP CDPSIGSLPE RSKWKCYTSD VIWKQVLLLR DEMLLKNSAD 180 TSVQCSVWQK KQKMHPSMYD DNAAAERVRC SQRVQFAKNP LRKAFSSASS PSSSLSDKDL 240 IDGLADSLAE SGVHLLWNQR RKRIPVGPQF QADIPEWRQE KCESNSKWLG TQIWPLDKQD 300 QNRMLIERDP IGKGRQDTCG CQYPVSYDCV KFHLAEKRKK VKLELGSAFY RWKFDLMGEE 360 VALYWTKEQE KKFQDTVKSN PLSVNKGFWK EIFKLFPNKS RESLVSYYFN VFLLRLRGQQ 420 NRMDASNIDS DNDEPQFGPR TNCFGRDAKF SIFCSPRKEH KDPI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009617230.1 | 0.0 | PREDICTED: AT-rich interactive domain-containing protein 1-like | ||||
Refseq | XP_016440024.1 | 0.0 | PREDICTED: AT-rich interactive domain-containing protein 1-like isoform X1 | ||||
TrEMBL | A0A1S3XJK4 | 0.0 | A0A1S3XJK4_TOBAC; AT-rich interactive domain-containing protein 1-like isoform X1 | ||||
STRING | XP_009617230.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1772 | 3 | 3 |