PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00078g04017.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

WRKY

Protein Properties

Length: 332aa MW: 36954.9 Da PI: 7.062

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00078g04017.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	107.5	6.6e-34	157	215	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYGqK vk+s+fprsYYrCt+a+C vkk+vers+edp++v++tYeg+H+h+ Peinf101Scf00078g04017.1 157 LDDGFRWRKYGQKAVKNSPFPRSYYRCTTATCGVKKRVERSSEDPSIVVTTYEGTHTHP 215 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.4E-34	142	217	IPR003657	WRKY domain
SuperFamily	SSF118290	1.83E-29	149	217	IPR003657	WRKY domain
PROSITE profile	PS50811	31.261	152	217	IPR003657	WRKY domain
SMART	SM00774	6.3E-40	157	216	IPR003657	WRKY domain
Pfam	PF03106	2.7E-27	158	215	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
MAEKENKLKP DTSPLENTTF SDQIPASSTS YSLSSIFHDM SPCDNQLTEK GSSSFNMLDT 60 MFASQYPITT TPSIFDLFHQ PPLPPPLLIS SQPKIPSDDQ IVNNNTPVAT PNSSSISSSS 120 NEAANDHDQD TKTVVKKQKR QREPRFAFMT KSEVDHLDDG FRWRKYGQKA VKNSPFPRSY 180 YRCTTATCGV KKRVERSSED PSIVVTTYEG THTHPCPITP RGSIGILPET TTYGGSIGGL 240 GGGTSSLFIP QFHYHQLQQQ QQQHQQQQPT YFQTPTLPLN FSTGDNSSLF STNSSQERRF 300 SPSTSSSSSM ARDHGLLQDM VPSQMRRDPK EE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	2e-26	150	217	10	77	Probable WRKY transcription factor 4
2lex_A	2e-26	150	217	10	77	Probable WRKY transcription factor 4
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	135	141	KKQKRQR
2	136	141	KQKRQR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016506501.1	1e-120	PREDICTED: probable WRKY transcription factor 48 isoform X2
Swissprot	Q9FGZ4	4e-53	WRK48_ARATH; Probable WRKY transcription factor 48
TrEMBL	A0A1S4CZF3	1e-119	A0A1S4CZF3_TOBAC; probable WRKY transcription factor 48 isoform X2
STRING	XP_009764098.1	1e-119	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1309	24	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49520.1	1e-48	WRKY DNA-binding protein 48

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]