PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00078g00021.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family GRAS
Protein Properties Length: 880aa    MW: 99322.7 Da    PI: 6.2706
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00078g00021.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS236.61.1e-721184754368
                      GRAS   4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 
                               lL + Ae++s+++ + a++lL+  ++ asp+g+++qR++ y+ eAL++r+ +++  l    p   +++ +  e+  ++++ +++ 
  Peinf101Scf00078g00021.1 118 LLQASAEMFSKRHYAHARELLSLCNQSASPTGTSVQRVVYYYGEALRERIDKETGALPPNRPEGGKEKPSDLEVKPFVNICYQLP 202
                               677789*********************************************9333333222222222222444444555566666 PP

                      GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAe.e 171
                                ++++++++  qaIl+ v++  rvH iDf i+ G +W+ L+qaLa++   +   l+iT+vg     sk+   e+g+rL++fA+ +
  Peinf101Scf00078g00021.1 203 LFFRVAQFAGIQAILDNVKSVGRVHLIDFRIKSGSHWIILMQALANQGdCPLELLKITAVGT----SKDLADEIGQRLSSFASeN 283
                               689******************************************987345559********....9***************626 PP

                      GRAS 172 lgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFler 256
                               ++ pf+f++ v++++  l+ + +++++ E+++V     l  +l+ +++le     +L++vksl+P v++v++ +a++n++sF+er
  Peinf101Scf00078g00021.1 284 MKFPFSFKA-VVSEMRHLTKDLFDLDTSEVVVVYAEQCLGGMLAWPQHLEA----FLRFVKSLNPCVMIVIDTDANTNAPSFMER 363
                               9********.7999****************************977777776....****************************** PP

                      GRAS 257 flealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklll 341
                               f+eal  ++a+fd le+ + ++++ r+++E +  ++ i n+++ eg+er+ r+ +le Wr+ + ++G k+ +ls+   +qa+l+ 
  Peinf101Scf00078g00021.1 364 FSEALFLHAAFFDILETCMKQNNQYRMVIEGHKARKGIHNMITSEGEERTFRNVRLEIWRALFAKFGIKETELSDPSLDQANLMA 448
                               ************************************************************************************* PP

                      GRAS 342 rkvksdgyrveeesgslvlgWkdrpLv 368
                               ++ +    +++ +++ l++ Wk+ p++
  Peinf101Scf00078g00021.1 449 ERSSPGSCTLDMDEKGLIIKWKGTPIT 475
                               ***95559***************9986 PP
2GRAS274.63.1e-845058764374
                      GRAS   4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl..... 83 
                               lL + Ae++s+++++ a+++L+  ++ +s++++p+qR++++f+eAL++r+ ++++++ +  + ++ s   ++e ++  ++     
  Peinf101Scf00078g00021.1 505 LLQASAEMFSNQQFKHARKYLSLCNQPVSSTDSPVQRVVHCFAEALRQRIDKETTSITRLPQDRPGSF--EVEPIHPEEFfmspk 587
                               57788***********************************************7777776555554443..444444443222233 PP

                      GRAS  84 .....fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetg 162
                                     +++ P++ ++ ++  q Il+ v++ +r+H iDf+i+ G +W  L+qaLa+R   +   l+iT+vg     sk+++e +g
  Peinf101Scf00078g00021.1 588 pyviaSYQALPFFSVALFAGIQVILDNVKSGRRLHLIDFGIKSGSHWTILMQALADRGdCPLELLKITAVGT----SKQAIEDVG 668
                               35556899*************************************************9444559********....9******** PP

                      GRAS 163 erLakfA.eelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqea 246
                               +rL++fA e+++ pf+f++ v++++ dl+ + +++++ E++aV   ++l r+l  + +     ++vL+++ksl P v+vv++ ea
  Peinf101Scf00078g00021.1 669 QRLSSFAaENIKFPFSFKA-VVSEIRDLRKDLFEIDSSEVVAVYTYYRLGRMLTCPDQ----LEAVLRFIKSLDPCVMVVIDTEA 748
                               ******73579********.7999****************************954444....556******************** PP

                      GRAS 247 dhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplse 331
                               ++n+++F erf eal ++sa+fdsle+ ++r++++ri +E+ +l++ i nv++ eg+er+ r+ +le Wr+ ++++G k++++se
  Peinf101Scf00078g00021.1 749 NTNAPTFIERFNEALFFHSAVFDSLETCMGRDNQDRIAIEELILRKIIHNVITSEGEERTFRNVRLEIWRSLFKKFGIKELEISE 833
                               ************************************************************************************* PP

                      GRAS 332 kaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                               +   qa+ll ++++    +++ + + l++ Wk+ p++++SaW+
  Peinf101Scf00078g00021.1 834 SSLYQANLLAERYAPGSCTLDMDGKGLIIKWKGTPIMFTSAWK 876
                               **************5559************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098536.98489461IPR005202Transcription factor GRAS
PfamPF035143.7E-70118475IPR005202Transcription factor GRAS
PROSITE profilePS5098541.555476856IPR005202Transcription factor GRAS
PfamPF035141.1E-81505876IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 880 aa     Download sequence    Send to blast
MDSSLAKATK KGKEQIQSSH CAEEKKENSC LPFASYRILQ KYYHGGERNE RHCDVSSNKK  60
TGSHVPSTVS IFEMARAQLL QYTSTKKEDD FTSIFFNPPI ADCSLSPKDS DDLELALLLQ  120
ASAEMFSKRH YAHARELLSL CNQSASPTGT SVQRVVYYYG EALRERIDKE TGALPPNRPE  180
GGKEKPSDLE VKPFVNICYQ LPLFFRVAQF AGIQAILDNV KSVGRVHLID FRIKSGSHWI  240
ILMQALANQG DCPLELLKIT AVGTSKDLAD EIGQRLSSFA SENMKFPFSF KAVVSEMRHL  300
TKDLFDLDTS EVVVVYAEQC LGGMLAWPQH LEAFLRFVKS LNPCVMIVID TDANTNAPSF  360
MERFSEALFL HAAFFDILET CMKQNNQYRM VIEGHKARKG IHNMITSEGE ERTFRNVRLE  420
IWRALFAKFG IKETELSDPS LDQANLMAER SSPGSCTLDM DEKGLIIKWK GTPITFDDCS  480
IASNSLDAHC GLSAEASEDL EIAFLLQASA EMFSNQQFKH ARKYLSLCNQ PVSSTDSPVQ  540
RVVHCFAEAL RQRIDKETTS ITRLPQDRPG SFEVEPIHPE EFFMSPKPYV IASYQALPFF  600
SVALFAGIQV ILDNVKSGRR LHLIDFGIKS GSHWTILMQA LADRGDCPLE LLKITAVGTS  660
KQAIEDVGQR LSSFAAENIK FPFSFKAVVS EIRDLRKDLF EIDSSEVVAV YTYYRLGRML  720
TCPDQLEAVL RFIKSLDPCV MVVIDTEANT NAPTFIERFN EALFFHSAVF DSLETCMGRD  780
NQDRIAIEEL ILRKIIHNVI TSEGEERTFR NVRLEIWRSL FKKFGIKELE ISESSLYQAN  840
LLAERYAPGS CTLDMDGKGL IIKWKGTPIM FTSAWKFHHD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-3312387526377Protein SCARECROW
5b3h_D2e-3312387526377Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015169309.10.0PREDICTED: DELLA protein RGL3-like
TrEMBLM1BZ590.0M1BZ59_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000562290.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1712335
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.12e-50RGA-like 2