PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00077g00010.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family Whirly
Protein Properties Length: 254aa    MW: 28302.1 Da    PI: 9.9103
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00077g00010.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly126.21.9e-39902151139
                    Whirly   1 svyktkaalkvkavrptfeald....sgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpa 81 
                               s+yk+kaal+++++ p+f+ ld    sg++k++r+G +ll++a+a+++r+ydW++kq+f+ls+te++++++l++k+sceffhdp 
  Peinf101Scf00077g00010.1  90 SIYKGKAALTIEPRSPEFSPLDvcfhSGAFKISREGLVLLQFAPAAGVRQYDWSRKQVFSLSVTEIGSIISLGAKDSCEFFHDPN 174
                               7*****************988655669*********************************************************8 PP

                    Whirly  82 akgsneGkvrkalkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139
                               ++   + ++ k                  v+n+l++ +es+++Pv+kaefavl s+++
  Peinf101Scf00077g00010.1 175 KGRRYNLHLFK-----------------GVQNKLINLDESIYIPVTKAEFAVLVSAFN 215
                               87655444333.................589***********************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.102.2E-5677237IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544471.8E-6283254IPR009044ssDNA-binding transcriptional regulator
PfamPF085365.6E-3491178IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0045910Biological Processnegative regulation of DNA recombination
GO:0009508Cellular Componentplastid chromosome
GO:0009570Cellular Componentchloroplast stroma
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003723Molecular FunctionRNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MLNLSLSPSP TSTGLNLNFQ NPTKTPYLSF SSSFNAIPFT NSNSRTPFSY TLKAFPKNLS  60
LTCRNSAYFE PQQQQQQQGG STPKVFVGYS IYKGKAALTI EPRSPEFSPL DVCFHSGAFK  120
ISREGLVLLQ FAPAAGVRQY DWSRKQVFSL SVTEIGSIIS LGAKDSCEFF HDPNKGRRYN  180
LHLFKGVQNK LINLDESIYI PVTKAEFAVL VSAFNFVLPY LLGWHTAVNS FKPEDASRSN  240
NANPRSGAVF EWSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1l3a_A1e-1046425212218p24: plant transcriptional regulator PBF-2
1l3a_B1e-1046425212218p24: plant transcriptional regulator PBF-2
1l3a_C1e-1046425212218p24: plant transcriptional regulator PBF-2
1l3a_D1e-1046425212218p24: plant transcriptional regulator PBF-2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that acts as a transcriptional activator of the pathogenesis-related gene PR-10a. Upon elicitation, binds a 30bp promoter sequence known as elicitor element response (ERE) and is required for PR-10a expression. {ECO:0000269|PubMed:10948264, ECO:0000269|PubMed:12080340, ECO:0000269|PubMed:14960277}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2333424e-94AF233342.1 Solanum tuberosum DNA-binding protein p24 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001275155.11e-127single-stranded DNA-binding protein WHY1, chloroplastic
SwissprotQ9LL851e-128WHY1_SOLTU; Single-stranded DNA-binding protein WHY1, chloroplastic
TrEMBLA0A0V0HSY51e-126A0A0V0HSY5_SOLCH; Putative single-stranded DNA-binding protein WHY1, chloroplastic-like
STRINGPGSC0003DMT4000454391e-127(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA77312430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02740.23e-83ssDNA-binding transcriptional regulator