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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Peinf101Scf00071g21007.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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| Family | C3H | ||||||||
| Protein Properties | Length: 523aa MW: 56807.7 Da PI: 7.9643 | ||||||||
| Description | C3H family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | zf-CCCH | 37.1 | 5.3e-12 | 163 | 187 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26
+++ C ++++t tCkyGd+CkF H+
Peinf101Scf00071g21007.1 163 GEKDCAHYMQTRTCKYGDSCKFDHP 187
7889********************8 PP
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| 2 | zf-CCCH | 36.8 | 6.4e-12 | 212 | 238 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
++++ C+++++t Ck+G+rCkF+H++
Peinf101Scf00071g21007.1 212 PGEPDCPYYMKTQKCKFGNRCKFNHPK 238
5789*********************96 PP
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| 3 | zf-CCCH | 39.5 | 9.1e-13 | 263 | 287 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27
++ C f+++tGtCk+G++CkF+H++
Peinf101Scf00071g21007.1 263 EPTCTFYMKTGTCKFGATCKFHHPR 287
689********************96 PP
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| 4 | zf-CCCH | 34.3 | 4e-11 | 337 | 363 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
++++ C+f+ +tG CkyG++C+++H++
Peinf101Scf00071g21007.1 337 PGEVDCPFYVKTGSCKYGGTCRYNHSE 363
57899********************95 PP
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| 5 | zf-CCCH | 40.9 | 3.5e-13 | 415 | 438 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26
+ +C+f+++tG+Ck+G+rC+F+H+
Peinf101Scf00071g21007.1 415 QIECDFYMKTGECKFGERCRFHHP 438
568********************9 PP
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| 6 | zf-CCCH | 39.7 | 8.2e-13 | 472 | 493 | 6 | 27 |
-SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27
C+++++tGtCkyG++CkF H+p
Peinf101Scf00071g21007.1 472 CPYYMKTGTCKYGATCKFDHPP 493
********************96 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50103 | 13.742 | 161 | 189 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 6.7E-4 | 161 | 188 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 7.72E-6 | 162 | 188 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 1.4E-9 | 163 | 187 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 4.9E-5 | 167 | 186 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 14.821 | 211 | 239 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 1.3E-5 | 211 | 238 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 2.2E-9 | 213 | 238 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 9.03E-6 | 216 | 240 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 1.8E-4 | 217 | 237 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 3.2E-6 | 260 | 287 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 15.441 | 260 | 288 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 4.3E-10 | 263 | 287 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 2.88E-6 | 264 | 288 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 3.6E-5 | 266 | 287 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 2.3E-6 | 336 | 363 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 14.342 | 336 | 364 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 9.2E-9 | 338 | 363 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.07E-5 | 340 | 365 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 2.4E-4 | 342 | 363 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 4.0E-7 | 412 | 439 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 15.601 | 412 | 440 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 2.09E-6 | 415 | 441 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 1.9E-10 | 416 | 438 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 4.5E-5 | 418 | 438 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 15.666 | 466 | 494 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 1.6E-6 | 466 | 493 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 7.33E-6 | 470 | 493 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 1.1E-5 | 472 | 491 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 3.7E-10 | 472 | 493 | IPR000571 | Zinc finger, CCCH-type |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0003723 | Molecular Function | RNA binding | ||||
| GO:0046872 | Molecular Function | metal ion binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 523 aa Download sequence Send to blast |
MANQLYGYNP SSSSTGLAAG GGRTTTRSMD DYLSKDKSLL LGGSTSYYTS SSYSPTTMLY 60 NTNVQSDSYI PTTATRVPGL GAYSQSSLTG PPGVDSYTPA AAAADSAFAG FKRSSADSLY 120 HRTLLAARNT IGQTEAWFSA NPLAKRPRFE SASNLSIYPQ RPGEKDCAHY MQTRTCKYGD 180 SCKFDHPIWV PEGGIPDWKE VPVVTESLPE RPGEPDCPYY MKTQKCKFGN RCKFNHPKDS 240 TAHLSQGSVQ NSDASVLPDR PSEPTCTFYM KTGTCKFGAT CKFHHPRDIQ LPSPKQENGS 300 AGNPGSANSE MTEDATLIKP LSVPALLHNS KGLPIRPGEV DCPFYVKTGS CKYGGTCRYN 360 HSERTISPVF GAPPAAHLNI GMVNPAASFL QNFDPRLTQT VLGLLPPVYP QRPGQIECDF 420 YMKTGECKFG ERCRFHHPLD RSTPVVSAND SQQPNVKLTL AGLPRREGAV HCPYYMKTGT 480 CKYGATCKFD HPPPGEVMAM ATSQGASLPV EGEDNADVNE QQQ |
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Involved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}. | |||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | HG975451 | 2e-98 | HG975451.1 Solanum pennellii chromosome ch12, complete genome. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_019263411.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 37 isoform X1 | ||||
| Swissprot | Q941Q3 | 0.0 | C3H37_ARATH; Zinc finger CCCH domain-containing protein 37 | ||||
| TrEMBL | A0A314L6G9 | 0.0 | A0A314L6G9_NICAT; Zinc finger ccch domain-containing protein 37 | ||||
| STRING | XP_009782011.1 | 0.0 | (Nicotiana sylvestris) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Asterids | OGEA10640 | 21 | 25 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G12680.1 | 0.0 | floral homeotic protein (HUA1) | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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