PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00066g02042.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | HSF | ||||||||
Protein Properties | Length: 392aa MW: 45514.2 Da PI: 4.4624 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 113.2 | 1.7e-35 | 11 | 103 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESX CS HSF_DNA-bind 2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhks 85 Fl k ye++ede++++lisws ++ nsf+++d +f++++LpkyFkhsnf+SF+RQLn+YgF+k+++++ weF+++s Peinf101Scf00066g02042.1 11 FLLKCYEMVEDESTDSLISWSsDSHNSFIIWDVPKFSSEMLPKYFKHSNFSSFIRQLNIYGFHKSDTDR---------WEFSNDS 86 9********************7777****************************************9999.........******* PP XXXXXXXXXXXXXXXXX CS HSF_DNA-bind 86 Fkkgkkellekikrkks 102 F kg+k+ll++i r+k+ Peinf101Scf00066g02042.1 87 FVKGQKHLLKNIVRRKN 103 **************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 2.7E-35 | 7 | 101 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 8.71E-32 | 7 | 101 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 9.9E-51 | 7 | 101 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 4.1E-30 | 11 | 101 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.7E-17 | 11 | 34 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.7E-17 | 50 | 62 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.7E-17 | 63 | 75 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 392 aa Download sequence Send to blast |
MVKSFENVAP FLLKCYEMVE DESTDSLISW SSDSHNSFII WDVPKFSSEM LPKYFKHSNF 60 SSFIRQLNIY GFHKSDTDRW EFSNDSFVKG QKHLLKNIVR RKNLGVVQKK PSQPEETKSC 120 TSQENKSLEL WKEVENLKID KDELTQELIK LKQHQQSSES KLILLRDQLK GMEKHQQQML 180 SFIVMAMQSP SFLVQFFQPK ENNWRMTENG SNILSEIEDD CEDMPSDRAI VRYHPPAHET 240 VEPLCAEPEP ALDAKKPMEL DLSSDELRDL FSNVDFFRGL MDEKHEQLRP FESIPLTLPE 300 LPDDDNMLEQ LLSFFPRTDD KEDEVLDHES CSHAGMEADS SVQPMECGTF EGPGEQFCGI 360 EDKNMEMALL ESRPDNSGNM DRLTEKMELT KF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 4e-22 | 7 | 101 | 25 | 129 | Heat shock factor protein 1 |
5d5v_B | 4e-22 | 7 | 101 | 25 | 129 | Heat shock factor protein 1 |
5d5v_D | 4e-22 | 7 | 101 | 25 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006340011.1 | 0.0 | PREDICTED: heat stress transcription factor A-8 | ||||
TrEMBL | M1BH27 | 0.0 | M1BH27_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400045089 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12235 | 22 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67970.1 | 3e-78 | heat shock transcription factor A8 |