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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Peinf101Scf00056g09008.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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| Family | MYB_related | ||||||||
| Protein Properties | Length: 183aa MW: 20685.7 Da PI: 8.3214 | ||||||||
| Description | MYB_related family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Myb_DNA-binding | 28.3 | 4.1e-09 | 14 | 43 | 1 | 30 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIart 30
rg+WT eEd++l+ ++++G ++W++ +r
Peinf101Scf00056g09008.1 14 RGPWTSEEDQILISFIQRYGHENWRALPRQ 43
89***********************99886 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Gene3D | G3DSA:1.10.10.60 | 1.3E-12 | 5 | 45 | IPR009057 | Homeodomain-like |
| SuperFamily | SSF46689 | 1.51E-8 | 8 | 45 | IPR009057 | Homeodomain-like |
| PROSITE profile | PS50090 | 7.77 | 9 | 49 | IPR017877 | Myb-like domain |
| Pfam | PF00249 | 4.9E-7 | 14 | 42 | IPR001005 | SANT/Myb domain |
| CDD | cd00167 | 1.23E-4 | 16 | 42 | No hit | No description |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 183 aa Download sequence Send to blast |
MVRAPCCEKM GLKRGPWTSE EDQILISFIQ RYGHENWRAL PRQAASDQTI ANQYPTCHED 60 LQENNSTSDT QANKEESMQP INAQIGHDGD TSISNDMKKA KNQKSCNVKG SRGVDGKAEA 120 VLSLRRSEQW QWQRRGYGDG DDKRGNGSRG VDGKAEAVLS LRRSEQWQWQ RRGYGDGDDK 180 RGN |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
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| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G23250.1 | 2e-22 | myb domain protein 15 | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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