PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00056g00035.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family MYB_related
Protein Properties Length: 302aa    MW: 34533.7 Da    PI: 9.6744
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00056g00035.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.57.3e-09549345
                              SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
           Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                              +WT  Ed l+ +a  ++      +W +Ia ++  g+t++q++s++ 
  Peinf101Scf00056g00035.1  5 SWTRYEDILFEQALILYHEQiadRWQLIADHVS-GKTPEQIISHYD 49
                              7*****************99*************.**********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.432156IPR017930Myb domain
SMARTSM007175.3E-5254IPR001005SANT/Myb domain
SuperFamilySSF466892.34E-10352IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.4E-6451IPR009057Homeodomain-like
PfamPF002493.4E-7449IPR001005SANT/Myb domain
CDDcd001675.83E-7548No hitNo description
SMARTSM007178.969137IPR001005SANT/Myb domain
PROSITE profilePS500904.077103135IPR017877Myb-like domain
SuperFamilySSF466892.22E-5107139IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MSTTSWTRYE DILFEQALIL YHEQIADRWQ LIADHVSGKT PEQIISHYDD LVHDVLEIVS  60
GRVEPPSYLD DPFDNEIFLR RIVKLNGKKV PLGLKKNTSC SLLGWKNMGD WRSISRNIVV  120
TRTPTQVASH GQKYFIRQQA MKKERKRSSI HDITTAVDTN PVPPQSSFQN QRGSQNFKFT  180
MSLKNELYSK GDIMGVLTES TLNEMVGKMV VKQNGIQLLC LCYDDKQNEL AWFSLLNAST  240
IHQRSIAGHR RQCNVNPSIS ISKIQMNQLT TSMMGPLITN TFKLHNTMKR SLVCKTQEMT  300
GL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755173e-77HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006345871.14e-77PREDICTED: transcription factor DIVARICATA-like
RefseqXP_009795456.13e-77PREDICTED: transcription factor DIVARICATA-like
RefseqXP_016473251.13e-77PREDICTED: transcription factor DIVARICATA-like
TrEMBLA0A1S4A9J28e-76A0A1S4A9J2_TOBAC; transcription factor DIVARICATA-like
TrEMBLA0A1U7Y0L88e-76A0A1U7Y0L8_NICSY; transcription factor DIVARICATA-like
TrEMBLM1C5T19e-76M1C5T1_SOLTU; Uncharacterized protein
STRINGXP_009795456.11e-76(Nicotiana sylvestris)
STRINGPGSC0003DMT4000604031e-76(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.12e-44MYB family protein