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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00049g09027.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | C3H | ||||||||
Protein Properties | Length: 256aa MW: 27480.5 Da PI: 8.5004 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 33.9 | 5.2e-11 | 91 | 116 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 k e Cr++ +G C++G++C+F Hg+ Peinf101Scf00049g09027.1 91 KSEVCRRWEDSGSCRFGSKCRFVHGK 116 7899********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 2.0E-6 | 89 | 116 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.685 | 89 | 117 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.4E-11 | 91 | 121 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.7E-7 | 91 | 120 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.0E-8 | 91 | 116 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
SVSPLVRYFH SSSSDSPKHR SSSGSRGSSG SGGGFRVPLG SIENIESPFR TPVKVEEEVV 60 VMDGILVGPK FGGKNKPSPL SSTSDYSGEN KSEVCRRWED SGSCRFGSKC RFVHGKEDIR 120 STAFANRNQS EVQISSRSHS SGSCSYGPRG RFVHQQVQSG ANPIVAAAAM ATPTTRIVSV 180 KDREPPSSGS STTSTSIVAI SCFSDWCPLD DNIEVFLPGS AEKCTSREDV DAHIQSVLHG 240 HTGRKRLPVF IDLVKE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019242910.1 | 9e-80 | PREDICTED: zinc finger protein 36, C3H1 type-like 3 | ||||
Refseq | XP_019242911.1 | 9e-80 | PREDICTED: zinc finger protein 36, C3H1 type-like 3 | ||||
Refseq | XP_019242912.1 | 9e-80 | PREDICTED: zinc finger protein 36, C3H1 type-like 3 | ||||
Refseq | XP_019242913.1 | 9e-80 | PREDICTED: zinc finger protein 36, C3H1 type-like 3 | ||||
Refseq | XP_019242919.1 | 9e-80 | PREDICTED: zinc finger protein 36, C3H1 type-like 3 | ||||
Refseq | XP_019242926.1 | 9e-80 | PREDICTED: zinc finger protein 36, C3H1 type-like 3 | ||||
Refseq | XP_019242932.1 | 9e-80 | PREDICTED: zinc finger protein 36, C3H1 type-like 3 | ||||
TrEMBL | A0A1J6J4N2 | 2e-78 | A0A1J6J4N2_NICAT; Uncharacterized protein | ||||
STRING | XP_009589110.1 | 2e-77 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7765 | 18 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66810.1 | 1e-06 | C3H family protein |