PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00049g02014.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family C3H
Protein Properties Length: 701aa    MW: 76827.2 Da    PI: 7.0715
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00049g02014.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.91.4e-07277300226
                               -S---SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                                 ++C+ f++ G C++Gd C +aHg
  Peinf101Scf00049g02014.1 277 SSVPCPEFRK-GACQRGDMCEYAHG 300
                               5689******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484031.38E-1811144IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.5E-1912159IPR020683Ankyrin repeat-containing domain
PfamPF127961.6E-1054128IPR020683Ankyrin repeat-containing domain
CDDcd002041.04E-1559148No hitNo description
SMARTSM002480.0055989IPR002110Ankyrin repeat
PROSITE profilePS5029718.77559162IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008812.82394129IPR002110Ankyrin repeat
SMARTSM002482.9E-494126IPR002110Ankyrin repeat
PRINTSPR014153.9E-595110IPR002110Ankyrin repeat
PRINTSPR014153.9E-5113127IPR002110Ankyrin repeat
Gene3DG3DSA:4.10.1000.101.6E-4274302IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-6275301IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.77276302IPR000571Zinc finger, CCCH-type
PfamPF006428.5E-6277300IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.7E-5308338IPR000571Zinc finger, CCCH-type
SMARTSM0035627310333IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 701 aa     Download sequence    Send to blast
MKINHPTVET GDTFTSLLEC AANNEIDAFE RWIECDLSSV HEVGLWYGRQ KGSKQMVLEH  60
RTPLMVAAVY GSIDVLKLIL SLPGVDVNRS CGRDNSTALH CAASGGSLNA VDAVKLLLEA  120
GADPNFKDAN GHRPVDVIVV SPKFHTVKSC LENLLKTDAI GDCNLGLSNA TSRSNSPPLS  180
PSPGNRSPSS ASDTTSSPRS AKSNDLPTHL TSEKKEYPID PSLPDIKNSI YTTDECRMFS  240
FKIRPCSRAY SHDWTECPFV HPGENARRRD PRKYHYSSVP CPEFRKGACQ RGDMCEYAHG  300
VFECWLHPAQ YRTRICKDGT ECNRRVCFFA HTQEELRPLY VSTGYVPSPR LNTSAANAID  360
FAAARSLIPG SPSSVSVMSQ SPFTLQMSPS ANGVSNMVGW PQQNVPALHL PGSNLQSSRL  420
RSSLNARDIA AEDLTMLSDF DVQQQQLLNE LSCLSHSRMN ANSFNRSVRP KTLTPSNLED  480
LFSAESSSPR YPEQALAQAV FSPTHSSALF NQFQQQQAML SPINTKFSPK NADNPLLQAS  540
FGVPSSRNMS PRGMEPISPM SPRVSILSQS DKQHQFRSLS SRDLGSSASA IVGSPSDTRS  600
NWGTSMGKPD WAVNTEEFGK LRRSSSFELA NYGEEPDLLW VQSLVKESPQ EIKDKSASRV  660
LGLTGAGADI SKGSTSISQI EQLDQLGAWM EQMKLDQLIA Q
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009781965.10.0PREDICTED: zinc finger CCCH domain-containing protein 30-like
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A1U7X6680.0A0A1U7X668_NICSY; zinc finger CCCH domain-containing protein 30-like
STRINGXP_009781965.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8832488
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]