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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00040g09006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | WRKY | ||||||||
Protein Properties | Length: 352aa MW: 39578.7 Da PI: 7.2835 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 107.6 | 6.4e-34 | 188 | 245 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s++prsYYrCts++C+vkk+vers +dp++v++tYeg+Hnh+ Peinf101Scf00040g09006.1 188 EDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCQVKKRVERSFQDPSIVITTYEGQHNHH 245 8********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.3E-35 | 174 | 247 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.26E-29 | 179 | 247 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 32.374 | 182 | 247 | IPR003657 | WRKY domain |
SMART | SM00774 | 7.6E-40 | 187 | 246 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.0E-26 | 188 | 245 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 352 aa Download sequence Send to blast |
MADELRNFYY HQPFQEDRHS FLYSQQRASS TSGDDSSFVQ NLHMLDPSCM SYGEYIHGSS 60 CDYSTSLGKP FGFSAPSPSS EAFSNSIKDH DDIKPAAVLH VDAHNNDSIG GGSETPVTPN 120 SSISSSSTEA AADDQDSNKT STKKDKQVKD NLEDGEDTSK NKAKKKGEKK QKPPKFAFMT 180 KSEVDHLEDG YRWRKYGQKA VKNSPYPRSY YRCTSQKCQV KKRVERSFQD PSIVITTYEG 240 QHNHHLPATL RGNVARMLSP SMLLTPSPSN FHHQELIMPQ SFYGHGGSSA FGNPQSSMSM 300 YHQNLTPHHQ QLQLPPDYGL LQDMYETDIT TCFKYVNLST SKPQWKCLDG KE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-29 | 177 | 248 | 7 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 2e-29 | 177 | 248 | 7 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00440 | DAP | Transfer from AT4G18170 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT827656 | 3e-62 | KT827656.1 Manihot esculenta WRKY transcription factor 81 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009616483.1 | 1e-143 | PREDICTED: probable WRKY transcription factor 71 | ||||
Refseq | XP_016459945.1 | 1e-143 | PREDICTED: probable WRKY transcription factor 71 | ||||
TrEMBL | A0A1S3Z648 | 1e-142 | A0A1S3Z648_TOBAC; probable WRKY transcription factor 71 | ||||
STRING | XP_009616483.1 | 1e-142 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1485 | 24 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29860.1 | 1e-48 | WRKY DNA-binding protein 71 |