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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00039g06007.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | CO-like | ||||||||
Protein Properties | Length: 462aa MW: 51043.4 Da PI: 5.2358 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 20.1 | 1.3e-06 | 3 | 44 | 4 | 39 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 + C++++ +++ +C++++ lC +C H+ H++ Peinf101Scf00039g06007.1 3 PPCELCGVERAVVYCKSDSARLCLQCDGRVHRAnslslrHSR 44 68******9******************999966777777765 PP | |||||||
2 | zf-B_box | 16.3 | 2e-05 | 45 | 74 | 3 | 32 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClle 32 +C+++ ++++++ C d ++++C+ C + Peinf101Scf00039g06007.1 45 SLICDKCRSQPAIIRCMDEEMCMCDGCDWN 74 679************************865 PP | |||||||
3 | CCT | 59.7 | 1e-20 | 406 | 449 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R a++RY+eK+k+R F K+irY+sRKa+A++R RvKGrFvk+ Peinf101Scf00039g06007.1 406 RHIAKMRYNEKKKSRTFGKQIRYASRKARADTRRRVKGRFVKAG 449 66689************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 8.5E-9 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.17E-5 | 3 | 47 | No hit | No description |
PROSITE profile | PS50119 | 9.257 | 5 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS51017 | 14.316 | 406 | 448 | IPR010402 | CCT domain |
Pfam | PF06203 | 1.1E-15 | 406 | 448 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 462 aa Download sequence Send to blast |
MDPPCELCGV ERAVVYCKSD SARLCLQCDG RVHRANSLSL RHSRSLICDK CRSQPAIIRC 60 MDEEMCMCDG CDWNGNGCIA TGHRLRKLNT YNGCPSPLEF IRVLTLVLEM PIGIDDTNFD 120 NSFGTSPCSL FMSINEDSSL ETKRNEGPLV ANKLNELPCS LLSINEDSSL ETKRNEGSLV 180 ANKLNELASN IKFEPSWAIP SNPNYLISCN RDPAPFLEGS GLSKQDCPIK DLGFQEGDLS 240 KGVDFDDVTF NFDCGYELLA GPRQNHPRYS SEDKDLDCLV MEKNSSVTGS NSHVESSIET 300 TLSSGQQEYI GLQSSQMAAA TSSMSLLQTM SATANCLLLN PTSCNRSIAG LPFLPAPIQS 360 SMSLSLSNIT GESSATTDYQ DCGLSPVFLN GESPWDFNVE NSPQKRHIAK MRYNEKKKSR 420 TFGKQIRYAS RKARADTRRR VKGRFVKAGE VYDYDPSETK DF |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019246655.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 12-like isoform X1 | ||||
TrEMBL | A0A1J6J0L7 | 0.0 | A0A1J6J0L7_NICAT; Zinc finger protein constans-like 12 | ||||
STRING | XP_009787133.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4231 | 17 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21880.1 | 3e-42 | B-box type zinc finger protein with CCT domain |