PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00038g01014.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

SBP

Protein Properties

Length: 941aa MW: 105377 Da PI: 6.7557

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00038g01014.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	127.2	6.6e-40	124	200	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 Cqv++C +dls+ k+yhrrhkvCe+hska+ + v++++qrfCqqCsrfh+l+efDe+krsCrrrLa+hn+rrrk+qa Peinf101Scf00038g01014.1 124 CQVDDCGVDLSKGKDYHRRHKVCEMHSKATRARVANVMQRFCQQCSRFHALEEFDEGKRSCRRRLAGHNKRRRKTQA 200 **************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	2.5E-30	120	185	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.564	121	198	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	6.15E-37	122	202	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.8E-29	124	197	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 941 aa Download sequence Send to blast
MEGETQLYYR AMDLRGVGNK NIEWDPNDWK WDGHLFIAKP NNYQQSRQFF PLQTANLAVV 60 SSNTNSSSSC SDEVNLEKRE LEKRRRVVID ENDSGGGALS LKLFDGNSNN GKRSKVTSCN 120 RALCQVDDCG VDLSKGKDYH RRHKVCEMHS KATRARVANV MQRFCQQCSR FHALEEFDEG 180 KRSCRRRLAG HNKRRRKTQA DSGDNNNKTL SDGQASGYSL MSLLKILSNT HSNGTNHLED 240 QDLLSHLVRS LASQGALNGD NNLSGLLQAT SKLLNNDRSP SRNSDIVSLV SNGSRGPPRP 300 KEQHFATLAA QMPQRSSDVH DVRLDDVGTV SCQSPGTPFP IQNSSPAYAQ GRESPAGRSK 360 VINFDLNDVY VDSDDGGENL ERSPLPADRG TGSLECRSWL QQDSLQSSPP QTSRNSDSAS 420 AQSPSSSSSD AQSRTDRIVF KLFGKDPSDF PFVLRAQILD WLSHSPTEIE SYIRPGCVVL 480 TVYLRLPESA WEELCCDLSS SLSRLLDVRG DSFWRKGWIY VMLQNQIALV HDGQLLLDVP 540 LPIETIEHTS IISVKPIAVP ASDRAQFIVR GFNLTKPSTR LLCALEGDYL VAEANDEAEH 600 VDDIDKHDKL QSINLTCSIP AVSGRGFIEV EDHGLSNGFF PFIIAEDDVC SEIRMLESVI 660 ELTSADYING LTNNSELKSQ AMDFIYEMGW LLHRNNVKAR LGNSGPHAVL FPLKRFKWLM 720 EFSVDREWCA VVRKLLNLLL DGTVGTEENS FLKVSLSEMG LLHKAVRRNS RPLVELLLTY 780 TPEGIADELC SEYQSLVALE AWKNTRDSTG FTPEDYARLR GHYSYIHLVQ RKINRKASSR 840 HIVVDIPSIL SDENSNQKDE YAITSLEISQ TDRRPIRPCG LCDRKLAYGS RSRTLLYRPA 900 MFSMVALAAV CVCVALLFKS SPEVLYIFRP FRWEMLDFGS S

Sequence ? help Back to Top

Protein Sequence Length: 941 aa Download sequence Send to blast

MEGETQLYYR AMDLRGVGNK NIEWDPNDWK WDGHLFIAKP NNYQQSRQFF PLQTANLAVV  60
SSNTNSSSSC SDEVNLEKRE LEKRRRVVID ENDSGGGALS LKLFDGNSNN GKRSKVTSCN  120
RALCQVDDCG VDLSKGKDYH RRHKVCEMHS KATRARVANV MQRFCQQCSR FHALEEFDEG  180
KRSCRRRLAG HNKRRRKTQA DSGDNNNKTL SDGQASGYSL MSLLKILSNT HSNGTNHLED  240
QDLLSHLVRS LASQGALNGD NNLSGLLQAT SKLLNNDRSP SRNSDIVSLV SNGSRGPPRP  300
KEQHFATLAA QMPQRSSDVH DVRLDDVGTV SCQSPGTPFP IQNSSPAYAQ GRESPAGRSK  360
VINFDLNDVY VDSDDGGENL ERSPLPADRG TGSLECRSWL QQDSLQSSPP QTSRNSDSAS  420
AQSPSSSSSD AQSRTDRIVF KLFGKDPSDF PFVLRAQILD WLSHSPTEIE SYIRPGCVVL  480
TVYLRLPESA WEELCCDLSS SLSRLLDVRG DSFWRKGWIY VMLQNQIALV HDGQLLLDVP  540
LPIETIEHTS IISVKPIAVP ASDRAQFIVR GFNLTKPSTR LLCALEGDYL VAEANDEAEH  600
VDDIDKHDKL QSINLTCSIP AVSGRGFIEV EDHGLSNGFF PFIIAEDDVC SEIRMLESVI  660
ELTSADYING LTNNSELKSQ AMDFIYEMGW LLHRNNVKAR LGNSGPHAVL FPLKRFKWLM  720
EFSVDREWCA VVRKLLNLLL DGTVGTEENS FLKVSLSEMG LLHKAVRRNS RPLVELLLTY  780
TPEGIADELC SEYQSLVALE AWKNTRDSTG FTPEDYARLR GHYSYIHLVQ RKINRKASSR  840
HIVVDIPSIL SDENSNQKDE YAITSLEISQ TDRRPIRPCG LCDRKLAYGS RSRTLLYRPA  900
MFSMVALAAV CVCVALLFKS SPEVLYIFRP FRWEMLDFGS S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	2e-29	123	197	10	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	82	86	KRRRV

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence. {ECO:0000269\|PubMed:10524240, ECO:0000269\|PubMed:16095614}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016507693.1	0.0	PREDICTED: squamosa promoter-binding-like protein 1
Swissprot	Q9SMX9	0.0	SPL1_ARATH; Squamosa promoter-binding-like protein 1
TrEMBL	A0A2K9ZXI5	0.0	A0A2K9ZXI5_PETHY; Squamosa promoter binding-like protein 12c
STRING	XP_009773067.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1871	24	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	0.0	squamosa promoter binding protein-like 1

Publications ? help Back to Top
Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Chao LM, et al. Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage. Mol Plant, 2017. 10(5): p. 735-748 [PMID:28400323]