PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00035g38010.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family WOX
Protein Properties Length: 345aa    MW: 38067.5 Da    PI: 7.1245
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00035g38010.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox52.96.4e-1757117257
                               T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                  Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                               ++R+++ +eq+++Le+ F++   +p ++e++++  kl    ++ +++V++WFqNr+ + k+
  Peinf101Scf00035g38010.1  57 KQRWNPRPEQIHILEAIFNSgMVNPPRDEIRKIRIKLqefgQVGDANVFYWFQNRKSRSKH 117
                               89*****************99*************************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.04253118IPR001356Homeobox domain
SuperFamilySSF466893.59E-1154122IPR009057Homeodomain-like
SMARTSM003893.7E-855122IPR001356Homeobox domain
CDDcd000867.14E-856119No hitNo description
Gene3DG3DSA:1.10.10.604.2E-756124IPR009057Homeodomain-like
PfamPF000461.7E-1457117IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0030010Biological Processestablishment of cell polarity
GO:0048825Biological Processcotyledon development
GO:0090451Biological Processcotyledon boundary formation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MASSNRHWPS LFKSKSCTSH HQWHHDINSS LMSAGGCNKA PCTSVPAICE ERSPEPKQRW  60
NPRPEQIHIL EAIFNSGMVN PPRDEIRKIR IKLQEFGQVG DANVFYWFQN RKSRSKHKQQ  120
RHLQTNNKTP SSSSSSNSVG STNNNNKNVI DLLNSPTASV NQFQQTYFGT NNDFNMAAEP  180
FIFTQGFLHD VATDPHSCDV VHNSSGLFLS ELMGISQTAP LKKAENEKMD YIVPSAPNTT  240
NHSTVVPLTT SSTTPNISHI QGVEGSAGGC PTKAMIFIND VAFEVPAGPF NVSEVFGDDA  300
LLIHSSGQPL LTNEWGVTIQ PLQHGAFYYL VHTSTPVHDN TIALM
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1872810.0EF187281.1 Petunia x hybrida strain W138 EVERGREEN mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009622251.11e-129PREDICTED: WUSCHEL-related homeobox 9 isoform X1
RefseqXP_009793302.11e-129PREDICTED: WUSCHEL-related homeobox 9-like isoform X2
RefseqXP_016462054.11e-129PREDICTED: WUSCHEL-related homeobox 9-like isoform X1
RefseqXP_016489291.11e-129PREDICTED: WUSCHEL-related homeobox 9-like
TrEMBLA9XDF70.0A9XDF7_PETHY; EVERGREEN
STRINGXP_009622251.11e-129(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59422335
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45980.13e-67WUSCHEL related homeobox 8