PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00032g09002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | C3H | ||||||||
Protein Properties | Length: 222aa MW: 23105.1 Da PI: 9.6382 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 30.3 | 7.2e-10 | 26 | 51 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+lC+ + Ck+Gd+C+FaHg+ Peinf101Scf00032g09002.1 26 KTKLCNKYNTAEGCKFGDKCNFAHGE 51 8***********************96 PP | |||||||
2 | zf-CCCH | 34.6 | 3.2e-11 | 189 | 213 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC +f + G C +GdrC+FaHg Peinf101Scf00032g09002.1 189 KKTKLCENFTK-GSCTFGDRCHFAHG 213 59*********.*************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 1.4E-13 | 22 | 54 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.27E-8 | 23 | 54 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.929 | 24 | 52 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0014 | 24 | 51 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.6E-7 | 26 | 51 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF54791 | 3.65E-15 | 90 | 166 | IPR004088 | K Homology domain, type 1 |
SMART | SM00322 | 5.5E-12 | 94 | 164 | IPR004087 | K Homology domain |
PROSITE profile | PS50084 | 14.32 | 95 | 159 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:3.30.1370.10 | 1.9E-15 | 95 | 165 | IPR004088 | K Homology domain, type 1 |
Pfam | PF00013 | 2.4E-10 | 97 | 161 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 4.59E-13 | 97 | 159 | No hit | No description |
SuperFamily | SSF90229 | 9.29E-9 | 186 | 218 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.5E-15 | 187 | 219 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 8.6E-7 | 188 | 214 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.314 | 188 | 215 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.8E-9 | 189 | 213 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MNSAHAPSFR NAGAPSFSNG NAPAVKTKLC NKYNTAEGCK FGDKCNFAHG EWEIGKPIVP 60 SQEDPRAMGA GPMPGRYGGR METAVSGPAA SFGTSATAKI SVDASLAGPI IGKGGVNSKQ 120 IIRQTGAKLA IRDHETDPNL RNIELEGTFE QISQASAMVR ELINNLGPVG GPGRTHAIPG 180 GAAPQVSNKK TKLCENFTKG SCTFGDRCHF AHGAGELRKT GV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009767111.1 | 1e-137 | PREDICTED: zinc finger CCCH domain-containing protein 14-like | ||||
Refseq | XP_016439759.1 | 1e-137 | PREDICTED: zinc finger CCCH domain-containing protein 14-like | ||||
Swissprot | Q7F8R0 | 4e-78 | C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14 | ||||
TrEMBL | A0A1S3XIT1 | 1e-136 | A0A1S3XIT1_TOBAC; zinc finger CCCH domain-containing protein 14-like | ||||
TrEMBL | A0A1U7VQ88 | 1e-136 | A0A1U7VQ88_NICSY; zinc finger CCCH domain-containing protein 14-like | ||||
STRING | XP_009767111.1 | 1e-137 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA845 | 24 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06770.1 | 2e-63 | C3H family protein |